Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120255.Seq
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3449| Best HMM Match : DUF465 (HMM E-Value=9.2)                     31   1.2  
SB_2038| Best HMM Match : rve (HMM E-Value=0.0076)                     31   1.2  
SB_49929| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     30   2.1  
SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.9  
SB_683| Best HMM Match : zf-C2H2 (HMM E-Value=0.85)                    29   4.9  
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        29   6.5  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_3449| Best HMM Match : DUF465 (HMM E-Value=9.2)
          Length = 128

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 98  MYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKK 238
           M E ++ H  N +D +D +  +    ++NL NN+ +T + + + GKK
Sbjct: 1   MIEEID-HLDNEIDNLDLVNKELSKYINNLHNNSAQTANKIDEVGKK 46


>SB_2038| Best HMM Match : rve (HMM E-Value=0.0076)
          Length = 656

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 98  MYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKK 238
           M E ++ H  N +D +D +  +    ++NL NN+ +T + + + GKK
Sbjct: 577 MIEEID-HLDNEIDNLDLVNKELSKYINNLHNNSAQTANKIDEVGKK 622


>SB_49929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 680 HD-HARDHVLLTADLVRDLGPGLDRGHVHVSQARTATNIRR 799
           HD +    +LL AD+  +   GL R H H  Q +T  NIR+
Sbjct: 116 HDLYLESDILLLADVFDNFWLGLVRAHSHGEQIKTFNNIRK 156


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 44  YAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFM 172
           +  HLN + +EI+ + V + +  +  F N+V+E+ S++ +  M
Sbjct: 655 FKNHLNEKEKEIEVLKVEIMKLKKHQFDNLVEEVSSVRAELAM 697


>SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +2

Query: 62  NELQEIKSILVVMYE-SMEK--HFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNG 232
           +E Q  + +L   YE ++EK  +F   +DE+     DT   +  L+ N    ++   ++ 
Sbjct: 123 HEAQRREVVLTKDYERAVEKGDNFYAKIDELQEKVDDTTQKIKLLEENEESNFEREEESE 182

Query: 233 KKISNLDEKLTCY*QK 280
            KI  LDE++  Y Q+
Sbjct: 183 DKIKFLDEQVKMYLQR 198


>SB_683| Best HMM Match : zf-C2H2 (HMM E-Value=0.85)
          Length = 272

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 759 FTSPRQGRRQIFDALEKIRHQND 827
           +T P+ G + I   LE++RH+ND
Sbjct: 191 WTCPKCGEKMIITVLERLRHEND 213


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 104  ESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKLTCY 271
            ESM    SN   E +S+  +  M ++NLQ    RT     +   ++++ D KL  Y
Sbjct: 926  ESMRSTTSNKNAEQESVIQNQAMQITNLQEQLNRTKQTFTELESRLTDADSKLEYY 981


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 631 CSATGRQTSKAFAKSKRTLRKCPPCI*PCYDTIRPHR 521
           C  T R         + TLR C   + PC  T+RPHR
Sbjct: 240 CRYTLRPCRYTLRPCRYTLRPCGYTLRPCGYTLRPHR 276


>SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 496 DGEQKLLKRLQRHF*ILINVIRVDPKNRRVVEHNVIRRLHI 374
           D E+K L  L  H    +  ++ DP+NR+    N+ ++LH+
Sbjct: 181 DSEEKHLDELIEHAREELTSVKTDPENRKYPFVNLHKKLHL 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,086,149
Number of Sequences: 59808
Number of extensions: 498452
Number of successful extensions: 1360
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)