Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120255.Seq
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF036692-4|AAS47682.1|  318|Caenorhabditis elegans Serpentine re...    28   9.9  

>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 219 TASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISC 70
           T   + IV+F  L+ +I        +    + +   ID ++TT +DF  C
Sbjct: 38  TRWRIAIVIFAVLVGVIGSKYFANELQKIEIFQIPMIDMFLTTHLDFTLC 87


>Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical
           protein T03F7.7b protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
 Frame = -3

Query: 253 VEIGYFFAIFYNC----VPRSNRVILQVAQHHKRVRFKRIN-----FVYHIGKMFFHRF 104
           ++  +FFA F N     V ++ + I+Q+ +H K + +++IN        +IGK  F RF
Sbjct: 33  IDSPFFFARFLNANNGDVEKTRQKIIQLFEHRKLMGYEKINDLDIFTTVNIGKDCFERF 91


>Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical
           protein T03F7.7a protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
 Frame = -3

Query: 253 VEIGYFFAIFYNC----VPRSNRVILQVAQHHKRVRFKRIN-----FVYHIGKMFFHRF 104
           ++  +FFA F N     V ++ + I+Q+ +H K + +++IN        +IGK  F RF
Sbjct: 33  IDSPFFFARFLNANNGDVEKTRQKIIQLFEHRKLMGYEKINDLDIFTTVNIGKDCFERF 91


>AF036692-4|AAS47682.1|  318|Caenorhabditis elegans Serpentine
           receptor, class x protein14 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
 Frame = -2

Query: 371 KIL*RLYDF*YINLVISSVY*TLSRLLTTPFFVNSTLIFRRDWIFFC-------HFLQLR 213
           KI+ ++Y F +I+++ S +  +L  LL+      +  IF R    FC        F ++ 
Sbjct: 109 KIIGQIYTFIWISIIWSHILLSLCSLLSVHIPSRNQSIFSRQNCIFCLIFIFSLSFFEIG 168

Query: 212 PTF--ESCYFA 186
           P F  E+C+ A
Sbjct: 169 PLFAYETCFIA 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,926,551
Number of Sequences: 27780
Number of extensions: 388075
Number of successful extensions: 1118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)