Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120255.Seq
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    31   0.75 
At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit...    31   1.3  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    30   2.3  
At3g03360.1 68416.m00334 F-box family protein low similarity to ...    29   4.0  
At5g63020.1 68418.m07906 disease resistance protein (CC-NBS-LRR ...    29   5.3  
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    28   9.2  
At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containi...    28   9.2  
At1g69545.1 68414.m07997 leucine-rich repeat family protein cont...    28   9.2  

>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 433 GLHLSKFKNAFASVSTTFVHHPI*T*KMINDAG--GSCHNTVKYMVDIYGASVLILRTPC 606
           G+H  KF  AF  +S++       T +++ +      CH+T KY+   YG  +L+  T C
Sbjct: 822 GIHSEKFAMAFGLISSSGASKT--TIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRC 879


>At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At16), putative E3 ubiquitin ligase; similar
           to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
           thaliana]
          Length = 170

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 83  SILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDA 217
           +IL ++ E  +KH  + VD+ D     T   ++    N +RTWDA
Sbjct: 50  NILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDA 94


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 104  ESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLD 253
            E++   F+NV D I  L +     LS  +   I TWD + K  +   NLD
Sbjct: 4343 ENLASIFANVKDVIGKLCSYKDGSLSQEEEMNITTWDGLFKKAENDLNLD 4392


>At3g03360.1 68416.m00334 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 481

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 636 YCKQLFVLLLPSSPITITLEITFSSRQTSFAISVP 740
           +CK+L VL L  SP  ITLEIT   R     +  P
Sbjct: 221 FCKKLKVLDLSKSPRLITLEITRRCRMEPTQLVAP 255


>At5g63020.1 68418.m07906 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 888

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/74 (24%), Positives = 38/74 (51%)
 Frame = +2

Query: 44  YAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVV 223
           + GH+++    +  +LVV+  SM +   ++ +EI    +  ++ LS  +   IR W A +
Sbjct: 544 FLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTR---IRIWPAGL 600

Query: 224 KNGKKISNLDEKLT 265
              +K+  L+ + T
Sbjct: 601 VELRKLLYLNLEYT 614


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 439  HLSKFKNAFASVSTTFVHHPI*T*KMINDAGGSCHNTVKYMVDIYGASVLI 591
            H  K   AF  +ST     PI   K +   G  CHN +KY+  +Y   +++
Sbjct: 922  HSEKLAVAFGLLSTP-PSTPIRVIKNLRVCG-DCHNAMKYIAKVYNREIVL 970


>At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 850

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 439 HLSKFKNAFASVSTTFVHHPI*T*KMINDAGGSCHNTVKYMVDIYGASVLI 591
           H  K   AF  +ST+    P+   K +   G  CHN +KY+  + G  +++
Sbjct: 782 HSEKIAVAFGLISTS-KSRPVRVFKNLRVCG-DCHNAMKYISTVSGREIVL 830


>At1g69545.1 68414.m07997 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
           similar to disease resistance protein RPP1-WsA
           (GI:3860163)[Arabidopsis thaliana]
          Length = 703

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 177 NIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSLFKCPA 46
           N+IN+  L  S  S+ +E   SI +     +D   CSSL + P+
Sbjct: 377 NLINLKTLNLSGCSSLVELPSSIGNLNLKKLDLSGCSSLVELPS 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,360,545
Number of Sequences: 28952
Number of extensions: 337765
Number of successful extensions: 991
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)