Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120254.Seq
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    31   0.13 
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    27   1.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.9  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   4.9  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.5  
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    25   6.5  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    25   8.6  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   8.6  

>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 288 STTVKRTDSSHRLKSQVV-DKRPR--RSLDSPRLDGYVLASSPIPHTDWNEELKLYAQSH 458
           STT  +TDSS+     +V   +P    SLD  +L   + A  PI   ++  + KLYA  H
Sbjct: 309 STTTSQTDSSYNDVHDIVGSSQPDYLESLDYSQLFSILYALYPINFLEFLRDPKLYASKH 368

Query: 459 GY 464
            +
Sbjct: 369 NF 370


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 127 DLKNSVDWNGSTRKLLRVLNKRAYRQVLQCNGRYYW 234
           D K++V   GS     R+ N+R++R   Q   +Y W
Sbjct: 730 DGKHNVVLGGSFATATRISNRRSFRNFYQAGYKYAW 765


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +2

Query: 203  RCCSATADTIGPMAQSLF-----SCVQQIYSHAQ 289
            R C+A A    P+A+ LF     SC  ++Y H Q
Sbjct: 1151 RACAALAAAYQPLARDLFNASFVSCWSELYDHFQ 1184


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 43  NKMVFDVYYNGYYVEKKFSKEFLIHIAPDLKNSVDW 150
           N +V  VY NG     +F      HIAP+ +   DW
Sbjct: 301 NSVVSSVYMNGSNSVPRFILYSTTHIAPETEIIGDW 336


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 26   TNICGVIKWCSTCTT 70
            TN CG++ WC T  T
Sbjct: 1600 TNSCGMVAWCITVKT 1614


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 228 LLARWHKVCSHVYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSLDSP-RLDGYVL 395
           L+ARW  +  H+  R++RT ++T          +   V+K P   ++S   LDG +L
Sbjct: 162 LVARWSDLMCHLALRAVRTVASTSNGRMEIDIKRYARVEKVPGGEIESSCVLDGVML 218


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -2

Query: 305 PFDCCAVRANRSVVHMRTNFVPSGQ*YLPLHCNTCL*ARLFKTRSSL 165
           PF C  V  N +V+    N VP G   +  H  T     + KTR  L
Sbjct: 31  PFGCIIVDENDNVIMSAGNRVPDGD--VTQHAETRAVGLITKTRRDL 75


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 10  TSPILYKYLWCNKMVFDVYY-NGYYVEKKFSKEFLIHIAPDLKNS 141
           T  ++  +L  + +V ++ + N  Y+EK +  EFL  I P   NS
Sbjct: 538 TDNLVTVFLDAHDLVLNLNFSNENYIEKTYIDEFLDFIQPPFLNS 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,674
Number of Sequences: 5004
Number of extensions: 40323
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)