Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120254.Seq
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0421 - 3735155-3736067,3736154-3736176 30 1.2
05_05_0272 - 23738514-23738817,23739382-23740748 29 3.8
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265... 29 3.8
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482... 28 5.0
02_04_0134 - 20109610-20109984 28 5.0
09_06_0070 - 20670387-20670473,20672418-20672645,20673388-206735... 27 8.7
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959 27 8.7
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 27 8.7
>08_01_0421 - 3735155-3736067,3736154-3736176
Length = 311
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 139 SVDWNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVLMCTT 270
+V STR + L Y L+C+ R++WP+GT L C++
Sbjct: 261 TVSGQASTRWKVGGLVPFKYWTRLRCDLRFFWPNGTAVDLSCSS 304
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 333 QVVDKRPRRSLDSPRLDGYVLASSPIPHTDWN-EELKLY 446
+++ + P +S+DS LDGY + + W+ EE K Y
Sbjct: 432 EIIFENPEKSMDSVHLDGYAFFAVGMGPGKWSAEERKTY 470
>01_03_0289 -
14725832-14726114,14726216-14726298,14726432-14726545,
14727830-14728199,14728726-14728856,14728970-14729078,
14729257-14729378,14729522-14729625,14729849-14729953,
14730034-14730192,14730336-14730391,14730576-14730627,
14730725-14731031
Length = 664
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +1
Query: 196 YRQVLQCNG---RYYWPDGTKFVLM 261
+R+ L C G R +WPD T+FV M
Sbjct: 498 HREALHCKGEEHRLFWPDQTEFVRM 522
>06_03_1507 -
30646168-30646254,30646350-30646490,30648109-30648202,
30648445-30648509,30648934-30649176,30649442-30649499,
30649957-30650037,30650323-30650533,30650975-30651141,
30651216-30651268,30651600-30651681,30651765-30651914,
30652027-30652111,30652189-30652393,30652502-30652573,
30652911-30653456
Length = 779
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 288 STTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLA-----SSPIPHT 419
S+T+ RT SS + KRPRR +P D VLA P PHT
Sbjct: 38 SSTLGRTRSSSSASATPNSKRPRRPPCTPESDPPVLALRAHTPDPDPHT 86
>02_04_0134 - 20109610-20109984
Length = 124
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 159 HAQTAARFKQACLQTGVAVQRQILLARWHKVC 254
+A + A +QAC + G A Q + L RW K C
Sbjct: 14 NAASRAERRQACSEQGAAKQARRLERRWAKQC 45
>09_06_0070 -
20670387-20670473,20672418-20672645,20673388-20673508,
20673604-20673702,20673802-20673833
Length = 188
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 284 AQHNSQTDRQLASIKKPGSRQTAAPFFRFSSFGRICFGIVA 406
A+H + DR L ++ TA+ S GR CF VA
Sbjct: 99 ARHEADIDRGLLQLRASAKDATASHLQAAVSLGRACFAEVA 139
>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
Length = 395
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 5 SRRHRFYT-NICGVIKWCSTCTTTAIMWK 88
+RRH F ++CGV+ +CS A+ WK
Sbjct: 334 TRRHEFRRCSVCGVVNYCSR-ACQALHWK 361
>01_06_0916 +
32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 212 SATADTIGPMAQSLFSCVQQIYSHAQH-NSQTDRQLASIKKP 334
+A +D GP+A +L + + SH+QH N T LAS+ P
Sbjct: 243 AAASDEHGPIASTLNRTKRWLLSHSQHLNFITILILASVPNP 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,747,549
Number of Sequences: 37544
Number of extensions: 257247
Number of successful extensions: 745
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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