Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120254.Seq
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37310.1 68418.m04481 endomembrane protein 70, putative multi...    31   0.45 
At1g19930.1 68414.m02498 kelch repeat-containing F-box family pr...    30   1.4  
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ...    29   3.2  
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ...    29   3.2  
At3g12500.1 68416.m01556 basic endochitinase identical to basic ...    28   4.2  
At5g10520.1 68418.m01218 protein kinase family protein contains ...    28   5.5  
At4g25710.1 68417.m03701 kelch repeat-containing F-box family pr...    27   9.6  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    27   9.6  
At1g62600.1 68414.m07062 flavin-containing monooxygenase family ...    27   9.6  

>At5g37310.1 68418.m04481 endomembrane protein 70, putative
           multispanning membrane protein, Homo sapiens,
           EMBL:HSU94831
          Length = 564

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 7   KTSPILYKYLWCNKMVFDVYYNGYYVEK---KFSKEFLIHIAPDLKNSVDWNGSTR 165
           KT P  YKY   N + F+++YN   V +   +  + FL+ +  D +  VD+  + R
Sbjct: 146 KTDPSEYKYYLFNHLQFEIFYNKDRVIEIIVRTDQNFLVDLTEDKEVQVDFTYTVR 201


>At1g19930.1 68414.m02498 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 344

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 345 KRPRRSLDSPRLDGYVLASSPIPHT 419
           +RP  + D+ +  GYVLA+ PIPH+
Sbjct: 84  RRPILASDTRKSSGYVLATIPIPHS 108


>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 383

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
 Frame = +3

Query: 339 VDKRPRRSLDSPRLD-------GYVLASSPIPHTDWNEELKL-YAQSHGY 464
           VD+   RS    R+D       GY ++ SP P   W  E +L   + HGY
Sbjct: 102 VDREADRSYKRARIDTIAGGSPGYGVSESPSPRISWENERRLKMVRDHGY 151


>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 661

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
 Frame = +3

Query: 339 VDKRPRRSLDSPRLD-------GYVLASSPIPHTDWNEELKL-YAQSHGY 464
           VD+   RS    R+D       GY ++ SP P   W  E +L   + HGY
Sbjct: 102 VDREADRSYKRARIDTIAGGSPGYGVSESPSPRISWENERRLKMVRDHGY 151


>At3g12500.1 68416.m01556 basic endochitinase identical to basic
           endochitinase precursor SP:P19171 from [Arabidopsis
           thaliana]
          Length = 322

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = -3

Query: 460 PWLWAYSFNSSFQSVCGMGDDAKTYPSKRGESKERRGRLSTTWLFN 323
           P+ W Y F           + + T+P   G+    RG +  +W +N
Sbjct: 150 PYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYN 195


>At5g10520.1 68418.m01218 protein kinase family protein contains
           protein kinase domain, INTERPRO:IPR000719
          Length = 467

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 206 CCSATADTIGPMAQSLFSCVQQIYSHAQHNSQTDRQLASIKKPGSRQ 346
           C S ++D       S FS   +  S + H  Q ++ + SIKK   R+
Sbjct: 49  CSSCSSDDKSSSTSSPFSNTTKTVSSSHHGLQWNKMIESIKKKSMRR 95


>At4g25710.1 68417.m03701 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 390

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 366 DSPRLDGYVLASSPIPHTDWNEELKLYA 449
           +  R  GYVLA  PIPH+   +   L A
Sbjct: 112 EEDRSSGYVLARIPIPHSPLTQRYSLAA 139


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +2

Query: 233 GPMAQSLFSCVQQIYSHAQHNSQTDRQLASIKKPGSRQTAAPFFRFSSFGRICFGIVAHT 412
           G + +S+   +   ++ A+ N++T       K+ G         +FS  G +  G+ AH 
Sbjct: 288 GVIEKSILEIIDVQFTKAKRNTRTYASETRTKRFGESDNE---LKFSEEGLMIGGLAAHP 344

Query: 413 THRLE 427
           TH  E
Sbjct: 345 THAAE 349


>At1g62600.1 68414.m07062 flavin-containing monooxygenase family
           protein / FMO family protein low similarity to
           flavin-containing monooxygenase 2 from Cavia porcellus
           [SP|P36366]; contains Pfam profile PF00743
           Flavin-binding monooxygenase-like
          Length = 452

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 109 LIHIAPDLKN-SVDWN-GSTRKLLRVLNKRAYRQVLQCNGRYYWP 237
           ++ +AP  +  S  W   ST K  +VL    Y  V+ CNG Y  P
Sbjct: 137 VVKVAPAAEEGSGKWRIESTEKEKKVLRDEIYDAVVVCNGHYIEP 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,189,232
Number of Sequences: 28952
Number of extensions: 207804
Number of successful extensions: 611
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)