Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120253.Seq
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0421 - 3735155-3736067,3736154-3736176                           31   0.56 
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    29   3.9  
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959     29   3.9  
02_04_0134 - 20109610-20109984                                         28   5.2  
01_06_0119 + 26616087-26616278,26617190-26617669                       28   6.9  
06_02_0015 + 10599131-10600248,10601009-10602752                       27   9.1  
01_01_1016 - 8031876-8032008,8032129-8032253,8032659-8032728,803...    27   9.1  

>08_01_0421 - 3735155-3736067,3736154-3736176
          Length = 311

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 139 SVDWNGSTRKLLRVLNKRAYRQVLQCNARYYWPDGTKFVLMCTT 270
           +V    STR  +  L    Y   L+C+ R++WP+GT   L C++
Sbjct: 261 TVSGQASTRWKVGGLVPFKYWTRLRCDLRFFWPNGTAVDLSCSS 304


>09_04_0512 +
           18226981-18227143,18227648-18229555,18229649-18230295,
           18230710-18231949,18232085-18232419,18232500-18232577,
           18232872-18232978,18233020-18233062
          Length = 1506

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 233 GPMAQSLFSCVQQIYSHAQHNSQTDRQLASIKKPGSRQTAARSLDSPRLDGYVLASSPIP 412
           G + Q  FSC +   +   +    +    SI+KP S++          L+G+    +P+ 
Sbjct: 547 GDVYQPSFSCCKSQNNKDSNGCAVEGTTVSIEKPPSQEQYLLDRPPMELNGFADEDTPLG 606

Query: 413 HT--DWNEELK 439
           HT    NE LK
Sbjct: 607 HTLGTHNEMLK 617


>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
          Length = 395

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 5   SRRHRFYK-NICGVIKWCSTCTTTAIMWK 88
           +RRH F + ++CGV+ +CS     A+ WK
Sbjct: 334 TRRHEFRRCSVCGVVNYCSR-ACQALHWK 361


>02_04_0134 - 20109610-20109984
          Length = 124

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 159 HAQTAARFKQACLQTGVAVQRQILLARWHKVC 254
           +A + A  +QAC + G A Q + L  RW K C
Sbjct: 14  NAASRAERRQACSEQGAAKQARRLERRWAKQC 45


>01_06_0119 + 26616087-26616278,26617190-26617669
          Length = 223

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 296 SQTDRQLASIKKPGSRQTAARSLDSPRLDGYVLASSPIP 412
           S +   L  +++   R  AAR +  PR DG VLA +P+P
Sbjct: 104 SSSPAALPGLRRGQGRHRAARLV--PRHDGIVLARAPVP 140


>06_02_0015 + 10599131-10600248,10601009-10602752
          Length = 953

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 136 NSVDWNGSTRKLLRVLNKRAYRQVLQCNA 222
           N+  +  S   +L ++N+R Y+Q ++CNA
Sbjct: 643 NATGFMASVAVILMLVNRRLYKQGIRCNA 671


>01_01_1016 -
           8031876-8032008,8032129-8032253,8032659-8032728,
           8032815-8034022
          Length = 511

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 386 IRPNEENLKNARPFVDYLAF*SMRAVGPFDC-CAVRANRSVVHM-RTNFVP 240
           I P  + L+NA  F  YL+F  ++A   ++  C +R   S V M  +N VP
Sbjct: 453 INPRFQELRNATAFPKYLSFVIVKATDAYEALCLMRNFVSHVSMDGSNIVP 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,417
Number of Sequences: 37544
Number of extensions: 242413
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)