Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120253.Seq
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9897| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_7556| Best HMM Match : HEAT (HMM E-Value=1.5e-09)                   29   4.0  
SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)                   29   4.0  

>SB_9897| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +3

Query: 132 EKQRRLERQHAQTAARFKQACLQTGVAVQ----RQILLARWHKVCSHVYNRSIRTHSTTV 299
           ++QR L R H   +A F     QT   VQ    RQ  L R H+  S +   S R    TV
Sbjct: 161 DRQRALYRPHQTDSAHFTDLTRQTARTVQTSPDRQHALYRPHQTDSALCTDSTRQTVRTV 220

Query: 300 KRT-DSSH 320
           + + DS+H
Sbjct: 221 QTSPDSAH 228



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +3

Query: 132 EKQRRLERQHAQTAARFKQACLQTGVAVQ----RQILLARWHKVCSHVYNRSIRTHSTTV 299
           ++QR L R H   +A F     QT   VQ    RQ  L R H+  S +   S R    TV
Sbjct: 341 DRQRALYRPHQTDSAHFTDLTRQTARTVQTSPDRQHALYRPHQTDSALCTDSTRQTVRTV 400

Query: 300 KRT-DSSH 320
           + + DS+H
Sbjct: 401 QTSPDSAH 408


>SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 245 QSLFSCVQQIYSHAQHNSQTDRQLASIKKPGSRQTAARSLDSPRLDGYVLASSPIPHT 418
           + L  C+++  ++A  N + D   +S      R  ++ SLDS  +DG + + SP  +T
Sbjct: 517 EELLECIEE--TNAMENDRIDTSFSSEGGSFKRCNSSSSLDSAFVDGDINSDSPRKYT 572


>SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 32  ICGVIKWCSTCTTTAIM-WKKNSLKS 106
           +CGVI +C++C   AIM W+   L++
Sbjct: 274 LCGVIAYCNSCFNPAIMFWRVGELQN 299


>SB_7556| Best HMM Match : HEAT (HMM E-Value=1.5e-09)
          Length = 331

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 209 CSATPDTIGPMAQSLFSCVQQIY--SHAQHNSQTDRQLASIKKPGSRQTAARSLDSPRLD 382
           C     +IGP+ Q +FSC+  +     ++H  +    + ++   G  + +   L S   D
Sbjct: 67  CKLLRFSIGPILQEVFSCLSAVLHTDKSEHVRRAATMVITLLLQGLEKDSIEVLGSSLKD 126

Query: 383 GYVLASSPIPHTDWNEELKLYAQ 451
            Y L    +  TD +E  +++AQ
Sbjct: 127 IYRLLKL-VEATDPDEATRVHAQ 148


>SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)
          Length = 490

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
 Frame = +2

Query: 137 TASTGTAARANCCAF*TSVPTDRCCSATPDTIGPMAQSLFSCVQQIYSHAQHNSQTDRQL 316
           T S   A R  C     + P    C  +P    P  QS    ++           +++ +
Sbjct: 239 TKSPVRAGRTACPVSPLTTPHISSCPLSPGVSSPKCQSPQQLLRSWLKVTPPRKNSNKHM 298

Query: 317 ASIKKPGSRQTAARSLDSPRL-DGYVLASSPIPHTDWNEELKLYAQS 454
             +++ GS+    +S   PRL  G   A S     D N+E KL  Q+
Sbjct: 299 DDVREEGSKGQKKQSA-MPRLRKGLEKALSECAVQDTNQESKLSMQA 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,216,471
Number of Sequences: 59808
Number of extensions: 301216
Number of successful extensions: 963
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)