Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120253.Seq
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25710.1 68417.m03701 kelch repeat-containing F-box family pr...    31   0.47 
At4g38670.1 68417.m05475 pathogenesis-related thaumatin family p...    30   1.4  
At5g01660.1 68418.m00082 kelch repeat-containing protein similar...    29   3.3  
At4g35120.1 68417.m04992 kelch repeat-containing F-box family pr...    28   4.3  
At5g35794.1 68418.m04297 hypothetical protein contains Pfam prof...    27   7.6  

>At4g25710.1 68417.m03701 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 390

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 326 KKPGSRQTAARSLDSPRLDGYVLASSPIPHTDWNEELKLYA 448
           +KP  R T + + +  R  GYVLA  PIPH+   +   L A
Sbjct: 100 RKP-DRTTTSSNKEEDRSSGYVLARIPIPHSPLTQRYSLAA 139


>At4g38670.1 68417.m05475 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 281

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +2

Query: 119 LRLI*KTASTGTAARANCCAF*TSVPTDRCCS---ATPDTIGPMAQSLF--SCVQQIYSH 283
           L+L+ +    G A R+ C AF    P   CCS   ATPDT  P   SLF      + YS+
Sbjct: 168 LKLVTRGNGNGVACRSACEAF--GDPR-YCCSDAYATPDTCQPSVYSLFFKHACPRAYSY 224

Query: 284 A 286
           A
Sbjct: 225 A 225


>At5g01660.1 68418.m00082 kelch repeat-containing protein similar to
           SP|P57790 Kelch-like ECH-associated protein 1 (Cytosolic
           inhibitor of Nrf2) {Rattus norvegicus}; contains Pfam
           profile PF01344: Kelch motif
          Length = 621

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
 Frame = +2

Query: 272 IYSHAQH--NSQTDR----QLASIKKPGSRQTAARSLDSP-RLDGYVLASSPIPHT 418
           ++SH +H  NS T+      + + K    R T      S  ++DG  L SSP+PHT
Sbjct: 205 VFSHDEHGDNSLTETVEQANIPTCKNLEDRDTLEEETCSEGKIDGSCLVSSPLPHT 260


>At4g35120.1 68417.m04992 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 389

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 255 SHVYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRVL*ILLVWTDMFWHRRP 407
           S  Y R+ R +STTV      +++   V  KR R + +L  WT   W R P
Sbjct: 110 SSSYPRT-RVNSTTVAAGTEIYKIGGTVKGKRSRAVFVLDCWTHR-WRRAP 158


>At5g35794.1 68418.m04297 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 662

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
 Frame = +2

Query: 140 ASTGTAARANCCAF*TSVPTDRCCSATPDTIGPMA--QSLFSCVQQI-YSHAQHNSQTDR 310
           A T   A A   A  T+ PT    +  P T  PM    + +  ++ I     Q N QTD 
Sbjct: 43  AQTTATAMATNAAPTTAAPTTTAPTTAPTTESPMLDDSTFYDALKHIPTEEIQENMQTD- 101

Query: 311 QLASIKKPGSRQTAARSLDSPRLDGYVLASSPIPHTDWNEEL 436
               ++    ++ A+   +S +    + + S    T+ N+EL
Sbjct: 102 ---EVEDENEKEEASEEEESGKSSRTLGSDSDSEETETNKEL 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,902,409
Number of Sequences: 28952
Number of extensions: 195514
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)