Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120251.Seq
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    33   0.064
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    31   0.26 
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    29   0.60 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    29   0.79 
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.8  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    28   1.8  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.8  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    27   2.4  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    27   2.4  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   3.2  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   4.2  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    26   5.6  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    26   5.6  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.4  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   9.8  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   9.8  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.8  

>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 32.7 bits (71), Expect = 0.064
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
 Frame = +2

Query: 503 RRRDDLRDKIESVLKHVK----KLNTNSEKFMVTHETFKNDVGNRFEQ---FELRLNELD 661
           ++RDD   ++ S L+H+K    +  + +E  +V  +T +     + +Q    + ++N+L+
Sbjct: 423 KKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKSDQIVSMQFQINDLN 482

Query: 662 AKLNMLQ-----SAEKLKTAIVTESQNGTVTFPRDITKHS 766
            +L  L      S E  K     E QNGT+  P + T  S
Sbjct: 483 EQLRDLMFTISASQEIQKMGQSEELQNGTIVLPNNSTVRS 522


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 605 KNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESQNGTVTFPRDITKH 763
           +ND  + F+   L LNE+++++N+L+ A     A +T   NG     + I  H
Sbjct: 733 RNDTLSLFQN-SLYLNEVESRINILEQAGMYPIAYLTAKSNGLEEKAQQILSH 784


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
 Frame = +2

Query: 422 DQAGVVENFDAVKF*QQKQRVAAPSN*RRRDDLRDKIESVLKHVKKLNTNSEKFMVTHE- 598
           D++     F+ + F   K     PS     + + + IE +L  ++    +S  F+ T+  
Sbjct: 551 DRSSTTNVFEQLLFSISKVTTNGPS-----ETISEDIEEILPSLESSERSSTPFLNTNSA 605

Query: 599 TFKNDVGN--RFEQFELRLNELDAKLNMLQSAEKLKTAIVTESQNGTVT 739
           + K++V     F  F+L+L  L   L++LQS      + +  S+ G  T
Sbjct: 606 SLKSEVVQLTTFSDFQLKLKTLQCVLDILQSLSNWAESGLYLSRRGVST 654


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 14/55 (25%), Positives = 31/55 (56%)
 Frame = +2

Query: 515 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 679
           +L    E+ +K ++   TNS+   V+ +   N++ ++ ++ +L+LNE + K   L
Sbjct: 559 NLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKKYQEL 613



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +2

Query: 560 LNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESQ 724
           L  NSEKF    E+ K+ V N  +      NE+D     L  AE     I  E+Q
Sbjct: 360 LKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQ 414


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +2

Query: 512 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFK-----NDVGNRFEQFELRLNELDAKLNM 676
           D+  + ++ ++K  KKL  ++E+    H T K     N +G  F + ++ L  +D KL++
Sbjct: 208 DENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVNANSLGKSFVKHDIPLPPVDLKLDI 267

Query: 677 LQ 682
            +
Sbjct: 268 FE 269


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 360 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 479
           ++ FH Q+ KRD+ +L  ++ T    L  L+   F + +N
Sbjct: 79  QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +2

Query: 506 RRDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQS 685
           ++ DL  KI  + K   KLNT     ++T +     +    ++ E R+  L+ +LNMLQ 
Sbjct: 516 KKADLTSKINRLDKDFVKLNTTYS--LLTDQVKTKQLA--LQEIESRVIRLEERLNMLQK 571

Query: 686 AEKLKTAIVTESQ 724
              ++ AI + S+
Sbjct: 572 L-SMQPAISSSSE 583


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +2

Query: 536 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVT 715
           + L H+  L   +      H TFK++V N    +EL  +EL A   +  S+    + I T
Sbjct: 350 AALNHISALEKETISHTDLHHTFKHEV-NSSNNYELTNDELAASSPLYTSSSVPPSHITT 408

Query: 716 ES 721
            S
Sbjct: 409 GS 410


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 512 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSA 688
           DD+   +ES  + +++   +S+K +   E  +ND   R    E + + L A L +   A
Sbjct: 377 DDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKAHLRLAVDA 435


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
 Frame = +2

Query: 515 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFE---QFELRLNELDAKLNMLQS 685
           DL+ + E +   +K L   ++      ET KND  N  E    +E  + E   KLN  ++
Sbjct: 326 DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEA 385

Query: 686 ----------AEKLKTAIVTES---QNGTVTFPRDITKHSILAIFSERIDDRIK 808
                     A++LK + ++ES   + G + F   +++   L ++ E+I   IK
Sbjct: 386 LISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSEQRDL-LYQEQIQSSIK 438


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 309 RAQFQDLCKNLLHCRIL 259
           RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 808 FDAVVDAFRKYGQNAVFGNVARKR 737
           FD  V+AF KYG++  F  V R +
Sbjct: 14  FDPYVEAFEKYGRDTAFIPVLRHK 37


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 160 HINVQQWSHIVKWDSFKCNTHSF 228
           H++V  WS I K+D++     S+
Sbjct: 74  HLSVDSWSSITKYDNYTVENESY 96


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -3

Query: 420 RTMRPTS*DRVWISACEK*FRLN--GKLDR---CPNCNQVCRRAQFQDLCKNL 277
           RT +P   D +W +AC++   +N   K  R    P C Q+C  +Q  D   NL
Sbjct: 81  RTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC-QICVHSQRNDGDDNL 132


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -2

Query: 718 FRYDGGFQFFGR---LQHVKFGVEFVQTQFKLLK--PVAHIVLERFVGDHKFFAVCIQ 560
           + YD  FQ       +Q+    ++ +Q  FK     PVA  +LER+V   K +  CI+
Sbjct: 253 YYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERYVYSKKNYEGCIK 310


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -3

Query: 768 MLCLVMSRGNVTVPFWLSVTMAVFNFSADCSMLSLASSSFKRNSN---CSNLLPTSFLNV 598
           ++CL+  R N+    W  + M  F  +    +L+  +S+    +       L PT  LN+
Sbjct: 326 VICLLSDRTNIRG--WFIIGMNFFGLAGFIILLATTNSAANYVATYLIALPLYPTVALNI 383

Query: 597 SWVTIN 580
           +W+  N
Sbjct: 384 TWINNN 389


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 506 RRDDLRDKIESVLKHVKKLNTNSEKFMVTHE-TFKNDVGNRFEQFELRLNELDAKLNMLQ 682
           +RD+    IES L+ V KL   SE F +  + T K ++  R +     LNE  +    L 
Sbjct: 32  KRDEFSRDIESELEKVAKL--KSESFSLKGKITQKEELTYRLQNLAASLNEKKSLSCDLH 89

Query: 683 SAEKL 697
           S ++L
Sbjct: 90  SRKQL 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,353
Number of Sequences: 5004
Number of extensions: 60020
Number of successful extensions: 231
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)