Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120251.Seq
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 35 0.068
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 31 0.83
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 31 1.1
01_06_1034 + 33962813-33963802 29 4.4
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 29 5.9
12_01_0591 - 4835894-4836328,4836343-4837882,4838911-4839050,484... 28 7.8
11_02_0123 - 8550193-8550213,8550434-8550682,8550787-8550834,855... 28 7.8
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 7.8
02_01_0731 - 5471795-5471811,5471953-5472035,5472235-5472331,547... 28 7.8
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 35.1 bits (77), Expect = 0.068
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 219 AQFQVQIRAQRHNAKFYNVIDFCKGLE-IAHDDILDCNWD 335
+ F V A+FYNV C +E IAHD +LDC+WD
Sbjct: 293 SDFIVDAEGLSETARFYNVQPVC--IEGIAHDMMLDCSWD 330
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 31.5 bits (68), Expect = 0.83
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +2
Query: 515 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEK 694
DL DKI + K L + ++ + + ND+ +FEQ + + + + +L + S +
Sbjct: 716 DLNDKIAVLQKEGSSLASELQQLEASFKNLGNDLEQKFEQISV-MQKNNEELELANSNLQ 774
Query: 695 LKTAIVTESQNGTV 736
+ A+V E +N V
Sbjct: 775 NELAMVQEQKNEAV 788
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/75 (18%), Positives = 37/75 (49%)
Frame = +2
Query: 512 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAE 691
D L++ ++++ + V +N EK++ E FKN+ + + EL+ + L+ +
Sbjct: 171 DYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESR 230
Query: 692 KLKTAIVTESQNGTV 736
+ + ++ G++
Sbjct: 231 RKLAVLQLQTGGGSL 245
>01_06_1034 + 33962813-33963802
Length = 329
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 387 WISACEK*FRLNGKLDRCPNCN 322
W AC + R++G+ CPNCN
Sbjct: 8 WCYACRRPIRVSGQDITCPNCN 29
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 330 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR 455
+D D + LNE++ ++K K+DL L+ K L ++ R
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKER 701
>12_01_0591 -
4835894-4836328,4836343-4837882,4838911-4839050,
4840051-4840605
Length = 889
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 473 KQRVAAPSN*RRRDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKN 610
K+ P R R + KIE + HVK++N ++ + T K+
Sbjct: 98 KKTTELPRKLRARHQIAKKIEEIKNHVKEVNERRMRYKLDEYTSKS 143
>11_02_0123 -
8550193-8550213,8550434-8550682,8550787-8550834,
8550939-8551025,8551104-8551184,8551264-8551368,
8551464-8551556,8551635-8551715,8551794-8551895,
8552144-8552224,8552304-8552405,8552499-8552834,
8552920-8553006,8553275-8553493,8553575-8553769
Length = 628
Score = 28.3 bits (60), Expect = 7.8
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Frame = +2
Query: 416 VRDQAGVVENFDAVKF*QQKQRVAAPSN*RRRDDLRD-KIESVLKHVKKLNTNSEKFMVT 592
V + V+ +VK K R PS R + + +E + + K N+E +VT
Sbjct: 366 VNATSNYVQQVCSVKCTNAKDRRGNPSIPYERTNAKQLSLEKLAQRTKTSQRNAESSLVT 425
Query: 593 HETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESQ 724
HE N+ G F Q + R + + +N + + + AI Q
Sbjct: 426 HEHVTNE-GYSFGQ-DSRNDITNGSVNNFEDSHTNRNAIQNNVQ 467
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +2
Query: 512 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAE 691
DD+ +IES+L + S++F V ++ N V + E+ + EL+ + L+ E
Sbjct: 372 DDMLSEIESLLSGEIDIPLPSDRFDVKERSWYNSVNSELERLRGLVRELEEREVKLE-GE 430
Query: 692 KLKTAIVTESQNGTVTFPRDI 754
L+ + E + V R +
Sbjct: 431 LLEYYGLKEQETDVVELHRQL 451
>02_01_0731 -
5471795-5471811,5471953-5472035,5472235-5472331,
5472460-5472652,5472782-5472849,5473345-5473639
Length = 250
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 694 FFGRLQHVKFGVEFVQTQFKLLKPVAHIVLER 599
FFG L H+K +E FKLL ++ LER
Sbjct: 27 FFGSLSHLKNDLECYLISFKLLPKYRNLHLER 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,005,589
Number of Sequences: 37544
Number of extensions: 365672
Number of successful extensions: 1056
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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