Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120251.Seq
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      31   0.75 
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    31   0.75 
Z81552-4|CAB04488.2|  765|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z68342-5|CAA92774.2|  416|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    29   3.0  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      29   3.0  
Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81028-2|CAB02694.1|  996|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z68297-2|CAA92594.3|  522|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U18546-1|AAB02615.1|  996|Caenorhabditis elegans Na,K-ATPase alp...    29   4.0  
AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z83244-7|CAB05829.1|  318|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z68342-6|CAD89740.1|  418|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical pr...    28   9.2  
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   9.2  
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = +2

Query: 554 KKLNTNSEKFMVTHETFKNDVGNRFEQFE--LRLNELDAKLNMLQSAEKLKT--AIVTES 721
           KK  T  +K +  H+ +  D+  R E FE  ++   L  +    + +E L+   A + E 
Sbjct: 447 KKTVTMLQKLISEHQKYMEDLPKRQEDFEEAVKHGGLGGRPVAPEFSEPLRARFAQIEEE 506

Query: 722 QNGTVTFPRDITKHSILAIFSERIDDRIKL 811
               ++  R +T H IL  + + ID++I L
Sbjct: 507 NEPRISTLRILTTHYILLQYLQHIDEKIIL 536



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 503  RRRDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFE 640
            R+RD +  +I   L H  K+N    +F       + D+     QFE
Sbjct: 1338 RKRDSMEARINKYLTHSAKINAKLTQFEKWLNAIEEDIEQTERQFE 1383


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
           anchorage protein1 protein.
          Length = 8545

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = +2

Query: 554 KKLNTNSEKFMVTHETFKNDVGNRFEQFE--LRLNELDAKLNMLQSAEKLKT--AIVTES 721
           KK  T  +K +  H+ +  D+  R E FE  ++   L  +    + +E L+   A + E 
Sbjct: 447 KKTVTMLQKLISEHQKYMEDLPKRQEDFEEAVKHGGLGGRPVAPEFSEPLRARFAQIEEE 506

Query: 722 QNGTVTFPRDITKHSILAIFSERIDDRIKL 811
               ++  R +T H IL  + + ID++I L
Sbjct: 507 NEPRISTLRILTTHYILLQYLQHIDEKIIL 536



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 503  RRRDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFE 640
            R+RD +  +I   L H  K+N    +F       + D+     QFE
Sbjct: 1338 RKRDSMEARINKYLTHSAKINAKLTQFEKWLNAIEEDIEQTERQFE 1383


>Z81552-4|CAB04488.2|  765|Caenorhabditis elegans Hypothetical
           protein F56G4.6 protein.
          Length = 765

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 723 WLSVTMAVFNFSADC--SMLSLASSSFKRNSNCSNLLPTSFLNVSWVT 586
           WL   + + N S  C  ++L L   S K   NCS +LP SF  +  +T
Sbjct: 93  WLCRIITLKN-SQKCVETLLKLCKKSIKTTGNCSKILPISFRELPGLT 139


>Z68342-5|CAA92774.2|  416|Caenorhabditis elegans Hypothetical
           protein F38E11.6a protein.
          Length = 416

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 503 RRRDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQ 634
           R  D+L  +I +V +++   N + + F+V   +FKN    +F++
Sbjct: 300 RASDNLTAQISAVYRYIASHNRHDDNFLVVVPSFKNQDAEKFKR 343


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 527  KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 628
            K+E   + + KL  N +K  ++H++ KND   RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 527  KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 628
            K+E   + + KL  N +K  ++H++ KND   RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 527  KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 628
            K+E   + + KL  N +K  ++H++ KND   RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771


>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/64 (20%), Positives = 30/64 (46%)
 Frame = -1

Query: 380 LLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVVSLCTYLYLKLCVLHLNE 201
           ++V+N ++  +    + I + Y+   N  T+  +  + +   V LC  LY+ + +     
Sbjct: 138 VVVRNLYICFIIKSVMLIILPYIYTANILTYTTLILLFQNLFVFLCALLYIPILISIRKA 197

Query: 200 SHLT 189
            HL+
Sbjct: 198 RHLS 201


>Z81028-2|CAB02694.1|  996|Caenorhabditis elegans Hypothetical
           protein B0365.3 protein.
          Length = 996

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -3

Query: 759 LVMSRGNVTVPFWLSVTMAVFNFSADCSMLSLASSSFKRNSNCSNLLPTSFLNVSWVTIN 580
           +V  +G   VP  L V  A F F  D S L+  S    R+ +C+N  P    N+++ + N
Sbjct: 168 IVEVKGGDRVPADLRVVSA-FGFKVDNSSLTGESEPQSRSPDCTNENPLETRNIAFFSTN 226


>Z68297-2|CAA92594.3|  522|Caenorhabditis elegans Hypothetical
           protein F11A10.3 protein.
          Length = 522

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 275 YIVEFCVVSLCTYLYLKLCVLHLNESHLTMCDHCWTFM 162
           YIV+   +  C + + K C+L   ES    C  C TF+
Sbjct: 308 YIVDATTIIDCMHTFCKSCLLTYFESDNNTCPTCGTFI 345


>U18546-1|AAB02615.1|  996|Caenorhabditis elegans Na,K-ATPase alpha
           subunit protein.
          Length = 996

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -3

Query: 759 LVMSRGNVTVPFWLSVTMAVFNFSADCSMLSLASSSFKRNSNCSNLLPTSFLNVSWVTIN 580
           +V  +G   VP  L V  A F F  D S L+  S    R+ +C+N  P    N+++ + N
Sbjct: 168 IVEVKGGDRVPADLRVVSA-FGFKVDNSSLTGESEPQSRSPDCTNENPLETRNIAFFSTN 226


>AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.1 protein.
          Length = 704

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/89 (22%), Positives = 40/89 (44%)
 Frame = +2

Query: 524 DKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKT 703
           D +  + K V+ L TN ++  +T  +FK D  N    FE+  ++L + +     AE   +
Sbjct: 96  DTVTRISKLVESLKTNLDQ--LTEHSFKEDRPNSVLFFEITHDDLKSSIKKYSDAEGSMS 153

Query: 704 AIVTESQNGTVTFPRDITKHSILAIFSER 790
           ++ +  +        +I +   + I  ER
Sbjct: 154 SLGSVKKISVAPKISEIVEEEDVEILEER 182


>Z83244-7|CAB05829.1|  318|Caenorhabditis elegans Hypothetical
           protein W06F12.3 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 333 DSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQT 500
           D DQVYH  +++    +S++    +G  F T    L+++ R    N  N ++ L++
Sbjct: 246 DQDQVYHAKQLLLRNFQSRK----MGQNFGTFPRALELIKRTETPNYENFIVILKS 297


>Z68342-6|CAD89740.1|  418|Caenorhabditis elegans Hypothetical
           protein F38E11.6b protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +2

Query: 503 RRRDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAK 667
           R  D+L  +I +V +++   N + + F+V   +FKN      ++F+ R+N ++ K
Sbjct: 300 RASDNLTAQISAVYRYIASHNRHDDNFLVVVPSFKNQ-DAELQKFK-RINFMEKK 352


>Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical
           protein F27D4.4a protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 297 EIAHDDILDCNWDSDQVYHLNEIIFHKQKSK 389
           E+  D+  + NWDSD+   LNE++  K K+K
Sbjct: 133 EVEKDEETNENWDSDK---LNEVVNKKNKNK 160


>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical protein
            F59A2.6 protein.
          Length = 1133

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
 Frame = +2

Query: 515  DLRDKIESVLKHVKKLNTNSEKFMVTHET----FKNDVGNRFEQFELRLNELDAKLNMLQ 682
            +L D+IE +   VKKL   +E   V  +T       ++    +Q    LN+ + + +M+Q
Sbjct: 915  ELTDRIEGLEAEVKKLTAANETKAVKADTDARKVVRELQKEVKQLYNELNDKNQQFDMVQ 974

Query: 683  -SAEKLKTAIVTESQNGTVTFPRDITKHSILAIFS 784
                +LKT+  T ++NG +   + + +    + FS
Sbjct: 975  EELTRLKTSKET-AENGQLQVQKQMDEEDRRSEFS 1008


>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical protein
            F59A2.6 protein.
          Length = 1133

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
 Frame = +2

Query: 515  DLRDKIESVLKHVKKLNTNSEKFMVTHET----FKNDVGNRFEQFELRLNELDAKLNMLQ 682
            +L D+IE +   VKKL   +E   V  +T       ++    +Q    LN+ + + +M+Q
Sbjct: 915  ELTDRIEGLEAEVKKLTAANETKAVKADTDARKVVRELQKEVKQLYNELNDKNQQFDMVQ 974

Query: 683  -SAEKLKTAIVTESQNGTVTFPRDITKHSILAIFS 784
                +LKT+  T ++NG +   + + +    + FS
Sbjct: 975  EELTRLKTSKET-AENGQLQVQKQMDEEDRRSEFS 1008


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,192,766
Number of Sequences: 27780
Number of extensions: 356433
Number of successful extensions: 1341
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)