Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120251.Seq
         (818 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27170.1 68415.m06029 structural maintenance of chromosomes (...    32   0.40 
At5g03990.1 68418.m00379 expressed protein predicted protein, Ar...    30   1.6  
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ...    30   2.1  
At4g35690.1 68417.m05066 hypothetical protein contains Pfam prof...    29   2.8  
At1g26780.1 68414.m03260 myb family transcription factor (MYB117...    29   3.7  
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con...    29   4.9  
At1g02730.1 68414.m00226 cellulose synthase family protein simil...    29   4.9  
At5g28740.1 68418.m03530 transcription-coupled DNA repair protei...    28   6.5  
At2g22610.1 68415.m02680 kinesin motor protein-related                 28   6.5  
At2g31500.1 68415.m03848 calcium-dependent protein kinase, putat...    28   8.6  

>At2g27170.1 68415.m06029 structural maintenance of chromosomes
           (SMC) family protein similar to basement
           membrane-associated chondroitin proteoglycan Bamacan
           [Rattus norvegicus] GI:1785540; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain. No suitalble
           start codon was identified.
          Length = 1207

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 19/86 (22%), Positives = 35/86 (40%)
 Frame = +2

Query: 503 RRRDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQ 682
           R   DL ++ E + KH  ++     +   +HE F      R E+   R  +   +  +  
Sbjct: 422 RLNTDLTERDEHIKKHEVEIGELESRISKSHELFNTKKRERDEEQRKRKEKWGEESQLSS 481

Query: 683 SAEKLKTAIVTESQNGTVTFPRDITK 760
             +KLKT +    +N     P D+ +
Sbjct: 482 EIDKLKTELERAKKNLDHATPGDVRR 507


>At5g03990.1 68418.m00379 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 302

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
 Frame = +1

Query: 145 DYKKYHINVQQWSH-----IVKWDSFKCNTHSFKYRYVHN 249
           D+   + N   W H        WD   CN +SF Y+ V N
Sbjct: 207 DHNNNNTNTDSWDHNNNFKAETWDQKNCNNNSFNYKKVEN 246


>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 787

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = +3

Query: 207 QMQHAQFQVQIRAQRHNAKFYNVIDFCKGLEIAHDDILDCN-WDSDQVYHLNEIIFHKQK 383
           ++Q++  ++    Q     FY +++  + L    + +L CN W+   VYH N++   +++
Sbjct: 50  EIQYSGAELSNHHQTQLGVFYEILEKARKL---CEKVLRCNRWNLKHVYHANKMKDLEKQ 106

Query: 384 SKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTE 503
             R LNS   LF   +      +R+N D     +  L TE
Sbjct: 107 ISRFLNSQILLFVLAE---VCHLRVNGDRIERNMDRLLTE 143


>At4g35690.1 68417.m05066 hypothetical protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 284

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +2

Query: 503 RRRDDLRDKIESVLK-----HVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAK 667
           RR+ +++ K+ SVLK     HV++     E   +     +ND+  + E+ E+ ++  + K
Sbjct: 204 RRQSNIKSKLASVLKKKKVHHVEETKNELENLDLEIFCSRNDLQKKLEEVEMSIDGFEKK 263

Query: 668 LNML 679
           L  L
Sbjct: 264 LEGL 267


>At1g26780.1 68414.m03260 myb family transcription factor (MYB117)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 280

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 700 NRHRNGKPKWHGDVSARHYQTQHFGHIFGTH 792
           N H N  P +H  +S  HY  Q F     TH
Sbjct: 224 NHHPNPNPNYHSFISTNHYFAQPFPEFNLTH 254


>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase (GI:757740) [Brassica
           napus]; similar to beta-glucosidase GB:AAB64244 from
           [Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
           (1997))
          Length = 527

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/71 (22%), Positives = 34/71 (47%)
 Frame = +2

Query: 530 IESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAI 709
           +  ++K++K    NS + ++T   +  D+G++     + LN+ + K  + +    L  AI
Sbjct: 398 LRKLMKYIKD-RYNSPEIIITENGYGEDLGDKDTDLSVALNDHNRKYYLQRHLLALNEAI 456

Query: 710 VTESQNGTVTF 742
             +  N T  F
Sbjct: 457 CEDKVNVTSYF 467


>At1g02730.1 68414.m00226 cellulose synthase family protein similar to
            cellulose synthase catalytic subunit [gi:13925881] from
            Nicotiana alata, cellulose synthase-4 [gi:9622880] from
            Zea mays
          Length = 1181

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = -1

Query: 425  GREQCAQRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVVSL 246
            G ++ A    + + FL+V    + MVN+IA+ + +   +   F  ++K+   V F    L
Sbjct: 1068 GDDEFADLYVVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVL 1127

Query: 245  CTYLY 231
            C +LY
Sbjct: 1128 C-HLY 1131


>At5g28740.1 68418.m03530 transcription-coupled DNA repair
            protein-related similar to XAB2 (XPA-binding protein 2)
            [Homo sapiens] GI:10566459
          Length = 917

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 817  KSEFDAVVDAFRKYGQNAVFGNVARKRHRAILAFRYDGGFQFFGRLQHVK 668
            +S+ D  V+  +K    AVFG +ARKR         DG  Q  G L+ +K
Sbjct: 862  ESDGDDHVEISQKEVPAAVFGGLARKRDEDGEEAGEDGAAQKLGALERIK 911


>At2g22610.1 68415.m02680 kinesin motor protein-related 
          Length = 1093

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/63 (23%), Positives = 35/63 (55%)
 Frame = +2

Query: 515  DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEK 694
            +L  +++   KH++++ T  E   V + T  N+V   F++       +++  N+L+++ +
Sbjct: 939  ELEMRLKEQEKHIQEMATTREFPEVANAT-PNEVKTCFKEDNFGNENMESNTNILRTSNR 997

Query: 695  LKT 703
            LKT
Sbjct: 998  LKT 1000


>At2g31500.1 68415.m03848 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Arabidopsis thaliana] gi|836942|gb|AAA67655;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 582

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +2

Query: 578 KFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESQNGTVTFPRDIT 757
           K+ +  E  + + G   E  E+   E  A   +  S EKL+T I  E     V   R + 
Sbjct: 65  KYDLGKELGRGEFGVTHECIEISTRERFACKRI--SKEKLRTEIDVEDVRREVEIMRCLP 122

Query: 758 KHSILAIFSERIDDR 802
           KH  +  F E  +D+
Sbjct: 123 KHPNIVSFKEAFEDK 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,727,929
Number of Sequences: 28952
Number of extensions: 304855
Number of successful extensions: 1009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)