Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120250.Seq
(443 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 91 9e-20
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 91 9e-20
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 91 9e-20
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 91 9e-20
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 91 9e-20
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 62 5e-11
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 36 0.002
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 33 0.026
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 0.98
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 3.0
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 5.2
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 5.2
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.9
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 25 6.9
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 6.9
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 9.1
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 90.6 bits (215), Expect = 9e-20
Identities = 40/50 (80%), Positives = 47/50 (94%)
Frame = +3
Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398
++KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 45.6 bits (103), Expect = 3e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282
MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 90.6 bits (215), Expect = 9e-20
Identities = 40/50 (80%), Positives = 47/50 (94%)
Frame = +3
Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398
++KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 45.6 bits (103), Expect = 3e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282
MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 90.6 bits (215), Expect = 9e-20
Identities = 40/50 (80%), Positives = 47/50 (94%)
Frame = +3
Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398
++KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 45.6 bits (103), Expect = 3e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282
MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 90.6 bits (215), Expect = 9e-20
Identities = 40/50 (80%), Positives = 47/50 (94%)
Frame = +3
Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398
++KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 90.6 bits (215), Expect = 9e-20
Identities = 40/50 (80%), Positives = 47/50 (94%)
Frame = +3
Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398
++KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 103 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 90.6 bits (215), Expect = 9e-20
Identities = 40/50 (80%), Positives = 47/50 (94%)
Frame = +3
Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398
++KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 179 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 90.6 bits (215), Expect = 9e-20
Identities = 40/50 (80%), Positives = 47/50 (94%)
Frame = +3
Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398
++KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 255 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 90.6 bits (215), Expect = 9e-20
Identities = 40/50 (80%), Positives = 47/50 (94%)
Frame = +3
Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398
++KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 331 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 45.6 bits (103), Expect = 3e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282
MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37
Score = 45.6 bits (103), Expect = 3e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282
MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 113
Score = 45.6 bits (103), Expect = 3e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282
MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 189
Score = 45.6 bits (103), Expect = 3e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282
MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 265
Score = 45.6 bits (103), Expect = 3e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282
MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 341
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 90.6 bits (215), Expect = 9e-20
Identities = 40/50 (80%), Positives = 47/50 (94%)
Frame = +3
Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398
++KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 45.6 bits (103), Expect = 3e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282
MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 61.7 bits (143), Expect = 5e-11
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = +3
Query: 243 RSQAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398
R + ++ +KEG+P QQRLI+AGKQ+ D K Y+++ S LH+VL LRGG
Sbjct: 25 RIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
Score = 31.1 bits (67), Expect = 0.080
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282
M I +KTLTGK I + +P + V+ +K+++ K+ P
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIP 37
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 36.3 bits (80), Expect = 0.002
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +3
Query: 258 IADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRL 389
IA + ++QRLI+AG+ L+D +++ Y IQ ++H+V L
Sbjct: 33 IAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 32.7 bits (71), Expect = 0.026
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -1
Query: 173 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGRRAR 3
+F LLLI D+G + L +++ A DT+T +Y + +DF R +L G+ +
Sbjct: 8 LFKLLLIGDSGVGKSCL------LLRFADDTYTESYISTIGVDFKIRTFELEGKTVK 58
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 0.98
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -1
Query: 173 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGRRAR 3
+ LLLI D+G + L +++ + D+ T ++ + IDF R +L G+R +
Sbjct: 9 LIKLLLIGDSGVGKSCL------LLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIK 59
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 3.0
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 168 KNANIHQNIDGQNHYRRNGTRRDGGRSQAKIADKEGVPVDQQRLIF--AGKQLEDSKTMA 341
K+ N Q+I G+++ R+N GRS + D +R + K+ S + +
Sbjct: 1518 KDKNKRQDISGESNSRQNNAISRAGRSNGSNRGNDSRDADGRRSTHYASNKRPRSSDSQS 1577
Query: 342 DYNIQKE 362
N+++E
Sbjct: 1578 PSNLREE 1584
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 183 HQNIDGQNHYRRNGTRRDGGRSQAKIADKEGVPVDQ 290
H + G + + G+RR GG +PVDQ
Sbjct: 936 HGGMSGSHRGSQRGSRRGGGERDKPDPSSLTIPVDQ 971
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 338 HSFGIFQLFARKDKSLLIYGH 276
H FGIF + D S+ YGH
Sbjct: 260 HVFGIFVQYPAADGSIFDYGH 280
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 24.6 bits (51), Expect = 6.9
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 203 KPLPPKRNPQRRWPISSKNCR*RRCA-RRSTKTYLCGQTIGRFQNYGRLQYSKGIYSSHG 379
KPL PK N + +W + N + R+S+++ G R GR +G YSSHG
Sbjct: 135 KPLAPKANGKEKWVTITPNFTHTPISNRKSSRSRNDG---SRRNGNGR---RRGNYSSHG 188
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 24.6 bits (51), Expect = 6.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 100 TIPPSVEARAHSQQPLSFISNS 165
T+ PS RAHSQ P S + N+
Sbjct: 59 TMRPSALTRAHSQNPNSSLVNN 80
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 24.6 bits (51), Expect = 6.9
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 255 KIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLR 386
+IAD D++++I+A + + + +AD+N H +L+
Sbjct: 542 EIADLRDELQDKEQIIYALRYAQKQRDIADFNQSLAKFPHKILK 585
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 122 ASTDGGIVQQAADTHTTNYFPSTAIDFH 39
A+ DG Q ++H NY+ +D+H
Sbjct: 2238 AAEDGKETLQIFESHPDNYYQVCFVDYH 2265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,441
Number of Sequences: 5004
Number of extensions: 39724
Number of successful extensions: 116
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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