BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120250.Seq (443 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 92 2e-19 U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 92 2e-19 U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 92 2e-19 M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 92 2e-19 L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 92 2e-19 Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 70 7e-13 AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 51 3e-07 L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 46 1e-05 AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 46 1e-05 M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 46 2e-05 U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 41 5e-04 U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 37 0.008 AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 37 0.008 U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical pr... 32 0.16 U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 32 0.16 AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 32 0.16 U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. 31 0.28 AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 31 0.28 U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 31 0.38 L19639-1|AAC37168.1| 253|Caenorhabditis elegans homeobox protei... 30 0.87 L19248-1|AAB04137.1| 253|Caenorhabditis elegans homeobox protei... 30 0.87 AC006605-9|AAK85445.1| 253|Caenorhabditis elegans Abnormal cell... 30 0.87 Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 29 1.1 AF125461-6|AAK18992.1| 98|Caenorhabditis elegans Insulin relat... 28 3.5 Z81499-2|CAB04088.1| 598|Caenorhabditis elegans Hypothetical pr... 27 4.6 AY494976-1|AAR87493.1| 598|Caenorhabditis elegans UNC-122 protein. 27 4.6 U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical pr... 27 8.1 U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical pr... 27 8.1 >Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical protein ZK1010.1 protein. Length = 128 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37 >U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein 1, isoform c protein. Length = 538 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 103 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 255 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 331 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 407 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 113 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 189 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 265 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 341 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 493 Score = 43.2 bits (97), Expect = 9e-05 Identities = 19/37 (51%), Positives = 27/37 (72%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTL GKTIT E E ++T+ ++K K+ K+ P Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIP 417 Score = 39.5 bits (88), Expect = 0.001 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAG 311 +AKI DKEG+P DQQRLIFAG Sbjct: 483 KAKIQDKEGIPPDQQRLIFAG 503 >U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein 1, isoform a protein. Length = 838 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 103 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 255 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 331 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 407 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 483 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 559 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 635 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 711 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 760 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 787 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 836 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 113 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 189 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 265 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 341 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 493 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 569 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 645 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 721 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 797 Score = 43.2 bits (97), Expect = 9e-05 Identities = 19/37 (51%), Positives = 27/37 (72%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTL GKTIT E E ++T+ ++K K+ K+ P Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIP 417 >M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin protein. Length = 838 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 103 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 255 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 331 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 407 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 483 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 559 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 635 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 711 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 760 Score = 90.6 bits (215), Expect = 4e-19 Identities = 40/50 (80%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQK+STLH+VLRLRGG Sbjct: 787 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKQSTLHLVLRLRGG 836 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 113 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 189 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 265 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 341 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 417 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 493 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 569 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 645 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 721 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 797 >L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribosomal fusion protein protein. Length = 128 Score = 91.9 bits (218), Expect = 2e-19 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +3 Query: 249 QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +AKI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG Sbjct: 27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37 >Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical protein F45H11.2 protein. Length = 77 Score = 70.1 bits (164), Expect = 7e-13 Identities = 31/53 (58%), Positives = 39/53 (73%) Frame = +3 Query: 243 RSQAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGGY 401 R + K+ +KEG+P QQRLIFAGKQ+ D KT ADY + S LH+VL LRGG+ Sbjct: 25 RIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGGF 77 Score = 32.7 bits (71), Expect = 0.12 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 M I +KTLTGK I + EP + V +K+K+ K+ P Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIP 37 >AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical protein F52C6.4 protein. Length = 292 Score = 51.2 bits (117), Expect = 3e-07 Identities = 23/46 (50%), Positives = 31/46 (67%) Frame = +3 Query: 255 KIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLR 392 K+ +K GVP DQQRLIF QLE+ + + YNI+ E +H+V R R Sbjct: 189 KVQNKHGVPPDQQRLIFGRAQLENDRALFAYNIRDEDIIHLVSRHR 234 Score = 29.1 bits (62), Expect = 1.5 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 169 KMQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 K+ + +KTL GKTI + +TV LK K+ K P Sbjct: 160 KLTVSVKTLFGKTIPISIKNTDTVETLKFKVQNKHGVP 197 Score = 27.5 bits (58), Expect = 4.6 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +1 Query: 124 RAHSQQPLSFIS-NSVKMQIFIKTLTGKTITAETEPAETVADLKQK 258 R S+ P IS +S M + +KT TGKTIT E P +++ K Sbjct: 42 RISSKLPEDQISVDSKTMLLSVKTSTGKTITVEA-PKNVKTEVRDK 86 >L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:ribosomal proteinfusion protein protein. Length = 163 Score = 46.0 bits (104), Expect = 1e-05 Identities = 23/48 (47%), Positives = 32/48 (66%) Frame = +3 Query: 255 KIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 KI EG+P ++QRL +AG+QLEDS D I E+T+++ L L GG Sbjct: 27 KIEAAEGIPAEEQRLCYAGRQLEDS----DCGIDSEATIYVNLELLGG 70 >AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like family protein 1,isoform a protein. Length = 163 Score = 46.0 bits (104), Expect = 1e-05 Identities = 23/48 (47%), Positives = 32/48 (66%) Frame = +3 Query: 255 KIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 KI EG+P ++QRL +AG+QLEDS D I E+T+++ L L GG Sbjct: 27 KIEAAEGIPAEEQRLCYAGRQLEDS----DCGIDSEATIYVNLELLGG 70 >M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.elegans ubiquitin A(UbiA) gene, 5' end. ). Length = 37 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +1 Query: 172 MQIFIKTLTGKTITAETEPAETVADLKQKLPIKKVCP 282 MQIF+KTLTGKTIT E E ++T+ ++K K+ K+ P Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37 >U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical protein C16C8.4 protein. Length = 226 Score = 40.7 bits (91), Expect = 5e-04 Identities = 19/43 (44%), Positives = 26/43 (60%) Frame = +3 Query: 258 IADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLR 386 I + +P L F+GK+LED ++ DYNIQK ST+ M R Sbjct: 182 IEHRHDIPQHSYWLSFSGKRLEDHCSIGDYNIQKSSTITMYFR 224 >U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. Length = 655 Score = 36.7 bits (81), Expect = 0.008 Identities = 15/48 (31%), Positives = 32/48 (66%) Frame = +3 Query: 255 KIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +I D+ G+PV +Q+L+ G ++D+ + A YN+ + +++ ++ RGG Sbjct: 605 QIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAIYLQVKERGG 652 >AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (splicing factor) relatedprotein 21 protein. Length = 655 Score = 36.7 bits (81), Expect = 0.008 Identities = 15/48 (31%), Positives = 32/48 (66%) Frame = +3 Query: 255 KIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 398 +I D+ G+PV +Q+L+ G ++D+ + A YN+ + +++ ++ RGG Sbjct: 605 QIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAIYLQVKERGG 652 >U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical protein C16C8.13 protein. Length = 244 Score = 32.3 bits (70), Expect = 0.16 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = +3 Query: 276 VPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 371 V + R++ K LED T+A YNIQ+ STL Sbjct: 208 VDISSFRMVLRDKVLEDDHTLAYYNIQEGSTL 239 >U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. Length = 69 Score = 32.3 bits (70), Expect = 0.16 Identities = 18/54 (33%), Positives = 30/54 (55%) Frame = -1 Query: 173 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGR 12 +F LLLI D+G + L +++ A DT+T +Y + +DF R +L G+ Sbjct: 11 LFKLLLIGDSGVGKSCL------LLRFADDTYTESYISTIGVDFKIRTIELDGK 58 >AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family protein 1 protein. Length = 205 Score = 32.3 bits (70), Expect = 0.16 Identities = 18/54 (33%), Positives = 30/54 (55%) Frame = -1 Query: 173 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGR 12 +F LLLI D+G + L +++ A DT+T +Y + +DF R +L G+ Sbjct: 11 LFKLLLIGDSGVGKSCL------LLRFADDTYTESYISTIGVDFKIRTIELDGK 58 >U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. Length = 66 Score = 31.5 bits (68), Expect = 0.28 Identities = 16/57 (28%), Positives = 32/57 (56%) Frame = -1 Query: 173 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGRRAR 3 +F LL+I D+G + +L +++ A +T + NY + +DF R ++G+R + Sbjct: 10 LFKLLIIGDSGVGKSSL------LLRFADNTFSENYITTIGVDFKIRTMDINGQRVK 60 >AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical protein Y47D3A.25 protein. Length = 209 Score = 31.5 bits (68), Expect = 0.28 Identities = 16/57 (28%), Positives = 32/57 (56%) Frame = -1 Query: 173 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGRRAR 3 +F LL+I D+G + +L +++ A +T + NY + +DF R ++G+R + Sbjct: 10 LFKLLIIGDSGVGKSSL------LLRFADNTFSENYITTIGVDFKIRTMDINGQRVK 60 >U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical protein C16C8.16 protein. Length = 592 Score = 31.1 bits (67), Expect = 0.38 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +3 Query: 201 QNHYRRNGTRRDGGRS-QAKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHM 377 +NH++ D R + +I V + R++ GK LED ++A YNIQ+ + + + Sbjct: 205 ENHWKLRVCGSDTIRHIKLRINSLAKVDISSFRMVLRGKLLEDHHSLAYYNIQEGALIWL 264 Query: 378 VLRLR 392 L+ Sbjct: 265 YSHLK 269 >L19639-1|AAC37168.1| 253|Caenorhabditis elegans homeobox protein protein. Length = 253 Score = 29.9 bits (64), Expect = 0.87 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 41 GNQLPLKGNNSWCGYRPPVAQFHHRWR 121 G Q P+ G+ S C Y P V HH W+ Sbjct: 91 GPQYPILGDQSLC-YNPSVTSTHHDWK 116 >L19248-1|AAB04137.1| 253|Caenorhabditis elegans homeobox protein protein. Length = 253 Score = 29.9 bits (64), Expect = 0.87 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 41 GNQLPLKGNNSWCGYRPPVAQFHHRWR 121 G Q P+ G+ S C Y P V HH W+ Sbjct: 91 GPQYPILGDQSLC-YNPSVTSTHHDWK 116 >AC006605-9|AAK85445.1| 253|Caenorhabditis elegans Abnormal cell lineage protein 39 protein. Length = 253 Score = 29.9 bits (64), Expect = 0.87 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 41 GNQLPLKGNNSWCGYRPPVAQFHHRWR 121 G Q P+ G+ S C Y P V HH W+ Sbjct: 91 GPQYPILGDQSLC-YNPSVTSTHHDWK 116 >Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical protein F33E2.6 protein. Length = 846 Score = 29.5 bits (63), Expect = 1.1 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = +1 Query: 100 TIPPSVEARAHSQQPLSFISNS-VKMQIFIKTLTGKTITAETEPAETVAD 246 T+PP EA ++ P++ S + V M + +T T+T++TEP +T + Sbjct: 723 TVPPKTEA-PRTEVPMTGPSRTEVPMTVTPETGLSSTVTSKTEPPKTTTE 771 >AF125461-6|AAK18992.1| 98|Caenorhabditis elegans Insulin related protein 32 protein. Length = 98 Score = 27.9 bits (59), Expect = 3.5 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +2 Query: 224 NPQRRWPISSKNCR*RRCARRSTKTYLC 307 NPQ+ I++K C+ + C+R K+ +C Sbjct: 68 NPQKEEDIATKCCKNKGCSREYIKSIMC 95 >Z81499-2|CAB04088.1| 598|Caenorhabditis elegans Hypothetical protein F11C3.2 protein. Length = 598 Score = 27.5 bits (58), Expect = 4.6 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 133 NVPLPPPMVELCNRRPIPTPRIISLQRQLISTPVI 29 N P P V+ R PIP P +I ++ +++ PV+ Sbjct: 162 NCPFPDLYVQ---RVPIPGPPVIKIEEKMVPVPVV 193 >AY494976-1|AAR87493.1| 598|Caenorhabditis elegans UNC-122 protein. Length = 598 Score = 27.5 bits (58), Expect = 4.6 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 133 NVPLPPPMVELCNRRPIPTPRIISLQRQLISTPVI 29 N P P V+ R PIP P +I ++ +++ PV+ Sbjct: 162 NCPFPDLYVQ---RVPIPGPPVIKIEEKMVPVPVV 193 >U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical protein C16C8.14 protein. Length = 233 Score = 26.6 bits (56), Expect = 8.1 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 255 KIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 371 +I G+ R K LED T+A YNI++ ST+ Sbjct: 190 RINSLAGIDTISFRTFCDDKFLEDDHTLAHYNIREGSTI 228 >U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical protein C16C8.5 protein. Length = 180 Score = 26.6 bits (56), Expect = 8.1 Identities = 8/32 (25%), Positives = 21/32 (65%) Frame = +3 Query: 282 VDQQRLIFAGKQLEDSKTMADYNIQKESTLHM 377 V+ L + G++L+D++++ YNI + +++ Sbjct: 124 VESFNLYYGGQKLQDNRSIGSYNIDQSREIYL 155 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,787,906 Number of Sequences: 27780 Number of extensions: 239767 Number of successful extensions: 761 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 665 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 760 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 767282256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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