Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120249.Seq
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 29 1.2
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 28 1.5
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 28 2.0
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 28 2.0
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 3.6
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 27 3.6
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 6.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 6.2
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 26 8.2
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 8.2
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 26 8.2
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 8.2
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 8.2
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 551 CSCPNCGKTFSYASDLYDHLKGS-TDLTRACYVC-ARIMSEHDLVEHLREKHH*KPFNC 721
C C K + ++ H++ +D C +C A + HDL HLR + +P+ C
Sbjct: 445 CLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC 503
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 366 IEQWHNTVKLLEEVTTFHPVNASKIYAVVS-DNEISITEDSLRQNKTINIRLLKVKNMV 539
++ WH T +E + FH NA + A +S D + IT + K ++ + + N++
Sbjct: 70 VKFWHKTPNGVEYIKEFHAHNAMLLSAELSQDERLFITGADDKSLKVFDVESIDLVNII 128
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 757 LQKHMADAHRPGVCTCGDCGRSFKS 831
LQ H+ +AH P +C CGR FK+
Sbjct: 194 LQNHIREAHVP---SCSICGRQFKT 215
Score = 26.2 bits (55), Expect = 6.2
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 539 KSLQCSCPNCGKTFSYASDLYDHLK-GSTDLTRAC-YV-CAR-IMSEHDLVEHLREKHH* 706
K C CGK +S S L HL+ S + C Y C++ + L H R +
Sbjct: 21 KIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNV 80
Query: 707 KPFNCN 724
KPF+C+
Sbjct: 81 KPFSCH 86
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 545 LQCSCPNCGKTFSYASDLYDHLKGS 619
L C NC K FS D++ HL+ S
Sbjct: 1062 LNCEVSNCKKCFSNYEDMFKHLQHS 1086
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 518 IKSKEYGKSLQCSCPNCGKTFSYASDLYDHLK 613
I+S K +CS P+C K F+ +L H++
Sbjct: 23 IRSHTGEKPFECSYPSCKKRFTRRDELIRHVR 54
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 746 SYKH-YKSTWQTLTGPVCVRVETADDHSNLCRHT-TLHLS--VHTPK 874
+YK YK W TL V + DD S+ CR + L L+ VH PK
Sbjct: 266 NYKSGYKLRWFTLNNGVLSYYKNQDDASSACRGSINLKLARLVHDPK 312
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +2
Query: 500 NNQHSPIKSKEYGKSLQCSCPNCGKTFSYASDLYDHLKG--STDLTRACYVCARIMSEHD 673
+N+ + + GKS C P C K F + L H++ +++ C +C + S D
Sbjct: 408 SNRKTSVPRSPGGKSFVC--PECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRD 464
Query: 674 -LVEHLR 691
L +H R
Sbjct: 465 NLRQHER 471
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 720 VTNVLFCSARTNITKAHGRRSQARCVYVWRLRTIIQISAGIQRSIYQYTLQKTC 881
+T+V+ C RT +T S + +W L T I A ++R +Y + + TC
Sbjct: 2299 ITHVVACDERTFLTA-----SLDLTLRLWTLSTNKPIKASLKRVLYGHRYRITC 2347
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 73 RVLNMTRQVDVKALISHLVRGDGAEKCRIC 162
R +N+TR +D+K++ + GAE +C
Sbjct: 331 RSMNLTRGIDLKSIAEKMNGASGAELKGVC 360
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 18 VPTFIEFNVIKSSLKQTTKSIKHDKTSGRESINFPSSQRGWRRKMSYLY 164
VP+ +E ++ SL + K +K S N+ + W RKM +LY
Sbjct: 1234 VPSLLETCLLFQSLPE-----KMEKCFAAGSKNYLKAMDNWNRKMKFLY 1277
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 96 SGRESINFPSS-QRGWRRKMSYLYG 167
SG ES + P ++GW +KMSY G
Sbjct: 208 SGEESFDEPLIYEQGWGKKMSYCLG 232
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 671 HVQTLSLRTHSKPESSPSILSN 606
H+ +LSL TH P SS ++ S+
Sbjct: 172 HLSSLSLHTHFNPSSSSTVSSD 193
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 551 CSCPNCGKTFSYASDLYDHLKGSTDLTRACYVCARIMSEHDLVE 682
C+ PN G YA +L++ ++ + C+V + + +E L++
Sbjct: 655 CAFPNAGLNSIYARNLFNTVEQLQSVLPNCHVPSNLSTESLLIK 698
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,827,352
Number of Sequences: 5004
Number of extensions: 80711
Number of successful extensions: 232
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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