Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120249.Seq
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 35 0.099
12_02_1112 + 26162188-26162877,26163263-26163634 31 0.93
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 31 1.2
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 30 2.8
08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957... 30 2.8
04_04_1422 + 33453498-33453519,33453617-33454887 30 2.8
01_06_0489 + 29754298-29754549,29754639-29754772,29755667-297557... 30 2.8
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194... 29 4.9
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 29 4.9
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 29 4.9
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 29 6.5
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 29 6.5
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 29 6.5
07_03_0845 - 21979581-21981281 29 6.5
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690... 29 6.5
01_03_0220 - 13905808-13905831,13906694-13906885,13906960-139075... 29 6.5
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 28 8.6
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 28 8.6
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 34.7 bits (76), Expect = 0.099
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = +2
Query: 512 SPIKSKEYGKSLQCSCPNCGKTFSYASDLYDHLKGSTDLTRACYVC 649
SP +SK K C NCGKTF YAS L H + L + +C
Sbjct: 345 SPCESK---KEFICPEENCGKTFKYASKLQKHEESHVKLDYSEVIC 387
>12_02_1112 + 26162188-26162877,26163263-26163634
Length = 353
Score = 31.5 bits (68), Expect = 0.93
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 103 VKALISHLVRGDGAEKCRICMGETTEGQVYLGDTVMVDGEKPVTLAELLEQSR 261
VK ++ + DG+E C + +++G + + D M+ EK LAE ++R
Sbjct: 265 VKGIVVFDDKNDGSELCNLIASASSDGIIRIWDARMIAKEKTTPLAEANTKAR 317
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 548 QCSCPNCGKTFSYASDLYDHLK 613
+CS P+CG++F Y SD H K
Sbjct: 878 KCSAPDCGQSFRYVSDYSRHRK 899
>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 739 APLVQTLQKHMADAHRPGVCTCGDCGRSFKSLP 837
AP VQT + +A HR G+ C +CG S + P
Sbjct: 1381 APRVQTSENSLA--HRKGITFCTNCGESSDATP 1411
>08_02_0582 +
18993816-18993890,18994050-18994446,18995645-18995748,
18995863-18996004,18996118-18996237,18996341-18996465,
18996903-18997061,18997161-18997323,18997420-18997545,
18997628-18997711,18997761-18998173,18998199-18998273,
18998463-18998663,18998862-18998971,18999072-18999156,
18999365-18999493,18999596-18999701,18999825-18999913,
19000064-19000366
Length = 1001
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 430 HPRFMLSYLTTKYPSPKTH*DKIKQ 504
HP F+ +++TK+ SP DK+KQ
Sbjct: 595 HPLFLFGFMSTKHSSPTIIPDKVKQ 619
>04_04_1422 + 33453498-33453519,33453617-33454887
Length = 430
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Frame = +3
Query: 504 INIRLLKV---KNMVKAYNAHVRTVGRHFHMHLI 596
+ +++LKV K + +A+ A + T+GR +H+HL+
Sbjct: 119 VAVKVLKVSMNKKVQEAFMAEIGTIGRTYHVHLV 152
>01_06_0489 +
29754298-29754549,29754639-29754772,29755667-29755721,
29755888-29756007,29756048-29756140,29756360-29756474,
29756728-29757077,29757264-29757332,29757902-29758509,
29758577-29758646
Length = 621
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 79 LNMTRQVDVKALISHLVRGDGAEKCRICMGETTEGQVYLGDTVMVDGEK 225
L +R V+ KA + DG KC++ +G EG+ L V DGE+
Sbjct: 79 LRRSRTVEGKAWVRVDAEPDGEGKCKVVIGCDVEGKWVLHWGVSYDGEQ 127
>12_01_0268 -
1941515-1941534,1941868-1942057,1942155-1942322,
1943425-1943568,1944284-1944443,1944512-1944621,
1944900-1945019,1945649-1945766,1946610-1946729,
1947228-1947285,1947590-1947723,1949332-1949414,
1949544-1949786,1949851-1949976,1950075-1951562
Length = 1093
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 554 SCPNCGKTFSYASDLYDHLKGSTDLTRACYVC 649
+CPNCGK+FS A D+ D L TD C C
Sbjct: 860 TCPNCGKSFS-AFDVKD-LVSCTDGNFYCESC 889
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 749 YKHYKSTWQTLTGPVCVRVETADDHSNLCRHTTLHLSVHTPKDLSK 886
Y+HY+ T P+ V+ + D S CR T + PKD +K
Sbjct: 119 YQHYQKNMSKATWPM---VQFSADESVACRMMTNEIQFFDPKDFTK 161
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 527 KEYGKSLQCSCPNCGKTFSYASDLYDHLK 613
K GK CS CG+ FS +++ H+K
Sbjct: 111 KHQGKLFTCSMDGCGRKFSIKANMQRHVK 139
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 509 HSPIKSKEYGKSLQCSCPNCGKTFSYASDLYDHLKGSTDLTRACYVCARIMSEHDL-VEH 685
H + S E ++CS C +FS S+L H+K S D + + C E +H
Sbjct: 235 HEEVPSTE---RIKCSFEGCECSFSNKSNLTKHIKASHDQVKP-FACRFTGCEKVFPYKH 290
Query: 686 LREKH 700
+R+ H
Sbjct: 291 VRDNH 295
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +2
Query: 506 QHSPIKSKEYGKSLQCS----CPNCGKTFSYASDLYDHLKGSTDLTRACYVCARIMSEHD 673
QH + + G+S+Q C CGK L + D R +C+RI H
Sbjct: 392 QHQKVGCVDLGQSIQLDGNYCCAACGKVIGILGFWKRQLMVAKDARRVDILCSRIYLSHR 451
Query: 674 LVE 682
L++
Sbjct: 452 LLD 454
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 548 QCSCPNCGKTFSYASDLYDHLKGSTDLTRACYVCARIMSE-HDLVEH 685
Q +C C K ++ SD HLK +C C R+ S +EH
Sbjct: 143 QWACARCSKAYAVHSDYKAHLKTCGTRGHSC-DCGRVFSRVESFIEH 188
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 473 HRRLIKTK*NNQHSPIKSKEYGKSLQCSCPNCGKTFSYASDLYDHL 610
H+ K + +N+ S GK + CP C KTF S + H+
Sbjct: 335 HKVSSKRRKSNKVSKFGEPVIGKDGKFECPVCNKTFEEQSRYFGHI 380
>07_03_0845 - 21979581-21981281
Length = 566
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 468 SITEDSLRQNKTINIRLLK-VKNMVKAYNAHVRTVGRHFHMHLICM 602
S+ + SL ++ I ++ L+ ++ K + VR +GR H +L+C+
Sbjct: 514 SVYKGSLPNSQMIAVKKLQGMRQREKQFQTEVRALGRIHHTNLVCL 559
>04_01_0526 -
6901003-6901056,6901070-6901404,6901423-6901607,
6902201-6904641
Length = 1004
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 384 TVKLLEEVTT-FHPVNASKIYAVVSDNEISITEDSLRQNKTINIRLLKVK-NMVKAYNAH 557
T K LE+ T FH + + VV ++ ED L+ N + ++ K++ K +
Sbjct: 514 TYKELEKATAGFHEILGAGASGVVYKGQL---EDELKTNIAVK-KIDKLQPETEKEFMVE 569
Query: 558 VRTVGRHFHMHLICMI 605
V T+G+ FH +L+ ++
Sbjct: 570 VETIGQTFHKNLVRLL 585
>01_03_0220 -
13905808-13905831,13906694-13906885,13906960-13907519,
13910007-13910187
Length = 318
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 676 GGASKRKTPLKAIQL*QMCCSAPLVQTLQKHMADAHRPGVCTCGDCGRSFKSL 834
GG R+ L ++ Q+C A V Q ++ H P V CGD F L
Sbjct: 19 GGRGGRQVQLSEAEIRQLCVEAKRVLLSQPNLLRIHAP-VKICGDIHGQFVDL 70
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +2
Query: 548 QCSCPNCGKTFSYASDLYDHLKGSTDLTRACYVCARIMSE-HDLVEH 685
Q +C C K ++ SD HLK C C R+ S +EH
Sbjct: 142 QWACSRCSKAYAVHSDYKAHLKTCGTRGHTC-DCGRVFSRVESFIEH 187
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 503 NQHSPIKSKEYGKSLQCSCPNCGKTFSYASDLYDHLKG 616
N S +K+ C P CGK F+ S L H+KG
Sbjct: 162 NLRSHLKTHALENYHVCPFPACGKRFTSDSKLKSHVKG 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,189,149
Number of Sequences: 37544
Number of extensions: 538796
Number of successful extensions: 1460
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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