Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120249.Seq
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    37   2e-04
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    35   0.001
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    30   0.025
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    28   0.099
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.40 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    25   0.70 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +2

Query: 557 CPNCGKTFSYASDLYDHLKGST-DLTRACYVCAR-IMSEHDLVEHLREKHH*KPFNCNKC 730
           C  C + F ++  L+ H++  T +    C VC++  +    LV H+R     KP+ C  C
Sbjct: 150 CDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKAC 209

Query: 731 AVLLRSYKHYKSTWQTLTG 787
                  K  K   +T TG
Sbjct: 210 GKGFTCSKQLKVHTRTHTG 228



 Score = 36.7 bits (81), Expect = 3e-04
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
 Frame = +2

Query: 503 NQHSPIKSKEYGKSLQCSCPNCGKTFSYASDLYDHLKGSTDLTRACYVCARIMSEHDLVE 682
           N+ S ++  +  KSL CS P+     S A      L    + T  C +C +   + +L +
Sbjct: 20  NEISTVEPVDPVKSLVCS-PDLSVFTSPACGSETPLTNIEEKTYQCLLCQKAFDQKNLYQ 78

Query: 683 -HLRE--KHH*KPFNCNKC----AVLLRSYKHYKSTWQTLTGPVCVRVETADDHSNLCRH 841
            HLR   K    P+ CN C    AV  R  +HY+    T TG    + E      ++  +
Sbjct: 79  SHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYR----THTGEKPYQCEYCSKSFSVKEN 134

Query: 842 TTLHLSVHT 868
            ++H  +HT
Sbjct: 135 LSVHRRIHT 143


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 554 SCPNCGKTFSYASDLYDHLKGSTDLTRACYVCARIMSEHDLVE-HLREKHH*KPFNCNKC 730
           SC  C K +     L  H++  T L   C++C +  S   L++ H+R     KPF+C  C
Sbjct: 18  SCKYCEKVYVSLGALKMHIRTHT-LPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHC 76



 Score = 26.6 bits (56), Expect = 0.30
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 542 SLQCSCPNCGKTFSYASDLYDHLKGST-DLTRACYVCAR 655
           +L C C  CGK FS    L  H++  T +   +C  C R
Sbjct: 40  TLPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNR 78


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 30.3 bits (65), Expect = 0.025
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +2

Query: 557 CPNCGKTFSYASDLYDHLKGST-DLTRACYVCAR-IMSEHDLVEHLREKHH*KPFNCNKC 730
           CP C K F+    L  H++  T +    C  C R  +   +L  HLR     +P+ C  C
Sbjct: 12  CPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYACELC 71

Query: 731 A 733
           A
Sbjct: 72  A 72



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/54 (27%), Positives = 19/54 (35%)
 Frame = +2

Query: 707 KPFNCNKCAVLLRSYKHYKSTWQTLTGPVCVRVETADDHSNLCRHTTLHLSVHT 868
           KPF C +C        H K+  +  TG         D       +   HL VHT
Sbjct: 8   KPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHT 61


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 28.3 bits (60), Expect = 0.099
 Identities = 17/64 (26%), Positives = 24/64 (37%)
 Frame = +2

Query: 665 EHDLVEHLREKHH*KPFNCNKCAVLLRSYKHYKSTWQTLTGPVCVRVETADDHSNLCRHT 844
           +H L  HLR     KPF C KC+    +     S  ++ +     R       +  C   
Sbjct: 1   KHHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSL 60

Query: 845 TLHL 856
            LHL
Sbjct: 61  KLHL 64


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 638 CYVCARIMSEHDLVEHLREKHH*KPFNCNKCAVLLRSYKHYKS 766
           C VC + +S    ++  +E+ H +P N   CA+  + ++   S
Sbjct: 374 CDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNS 416


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
 Frame = +2

Query: 557 CPNCGKTFSYASDLYDHLKGSTDLTRACYVC----ARIMSEHDLVEHLREKH 700
           CP C + FS    L  H +   + +   YVC     R  +++ L  H   +H
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQH 59


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 522 LIGEC*LFYFVLMSLR*WIFRCQIRQH 442
           L+G+  LF  +L++L  WI  C +  H
Sbjct: 311 LLGKYLLFTMILVTLSIWITVCVLNVH 337


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
 Frame = -2

Query: 615 PFK*SYKSDA-----YENVFPQFGHEHCKL 541
           P K S+++D      YE+ F +FG   C L
Sbjct: 247 PIKVSWRADGQIMVDYEDEFDEFGDSKCSL 276


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 625 LDSGLLCVRKDNV 663
           L  GL+CV KD++
Sbjct: 71  LSDGLMCVEKDSI 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,999
Number of Sequences: 438
Number of extensions: 5604
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)