Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120249.Seq
(889 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 33 0.25
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 33 0.25
At1g25400.1 68414.m03153 expressed protein similar to unknown pr... 30 1.8
At5g51700.1 68418.m06411 RAR1 disease resistance protein (RAR1) ... 30 2.4
At3g17360.1 68416.m02218 kinesin motor protein-related similar t... 29 3.1
At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i... 29 4.1
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 29 4.1
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ... 28 7.2
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 28 7.2
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 28 9.5
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 28 9.5
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 545 LQCSCPNCGKTFSYASDLYDHLKGSTDLTRACYVCA-RIMSEHDLVEHLREKHH*KPFNC 721
++C C TFS AS+L H+K D R +VC +H+R KH ++
Sbjct: 305 IKCEVEGCSSTFSKASNLQKHMKAVHDDIRP-FVCGFPGCGMRFAYKHVRNKHENSGYHV 363
Query: 722 NKCAVLLRSYKHYKS 766
C + + + + S
Sbjct: 364 YTCGDFVETDEDFTS 378
Score = 32.3 bits (70), Expect = 0.44
Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 8/125 (6%)
Frame = +2
Query: 500 NNQHSPIKSKEYGKSLQCSCPNCGKTFSYASDLYDHLKGSTDLTRACYVCAR------IM 661
N P + K + C CGK F Y S L H L C+
Sbjct: 200 NGDSQPAECSTGQKQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFT 259
Query: 662 SEHDLVEHLREKHH*KPFNCNKCAV--LLRSYKHYKSTWQTLTGPVCVRVETADDHSNLC 835
+E L H+R H + NC C L ++ K + T + P ++ E S
Sbjct: 260 NEECLKSHIRSCH--QHINCEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFS 317
Query: 836 RHTTL 850
+ + L
Sbjct: 318 KASNL 322
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 545 LQCSCPNCGKTFSYASDLYDHLKGSTDLTRACYVCA-RIMSEHDLVEHLREKHH*KPFNC 721
++C C TFS AS+L H+K D R +VC +H+R KH ++
Sbjct: 217 IKCEVEGCSSTFSKASNLQKHMKAVHDDIRP-FVCGFPGCGMRFAYKHVRNKHENSGYHV 275
Query: 722 NKCAVLLRSYKHYKS 766
C + + + + S
Sbjct: 276 YTCGDFVETDEDFTS 290
Score = 32.3 bits (70), Expect = 0.44
Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 8/125 (6%)
Frame = +2
Query: 500 NNQHSPIKSKEYGKSLQCSCPNCGKTFSYASDLYDHLKGSTDLTRACYVCAR------IM 661
N P + K + C CGK F Y S L H L C+
Sbjct: 112 NGDSQPAECSTGQKQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFT 171
Query: 662 SEHDLVEHLREKHH*KPFNCNKCAV--LLRSYKHYKSTWQTLTGPVCVRVETADDHSNLC 835
+E L H+R H + NC C L ++ K + T + P ++ E S
Sbjct: 172 NEECLKSHIRSCH--QHINCEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFS 229
Query: 836 RHTTL 850
+ + L
Sbjct: 230 KASNL 234
>At1g25400.1 68414.m03153 expressed protein similar to unknown
protein GI:6714347 from [Arabidopsis thaliana]
Length = 288
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 112 LISHLVRGDGAEKCRICMGETTEGQVYLGDTVMVDGEKPVTLAELLEQSRE 264
L+ ++R D + +I +G+ EG++ +GD MV+G L EL E E
Sbjct: 232 LLGKIIRVDVGDVDKIYVGDDVEGEITVGDMRMVNG----ALTELTESEVE 278
>At5g51700.1 68418.m06411 RAR1 disease resistance protein (RAR1)
Contains a 3 nt micro-exon at exon 2.
Length = 204
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 742 PLVQTLQKHMADAHRPGVCTCGDCGRSFK 828
PL +QK + D ++P VC CG++FK
Sbjct: 119 PLAPPVQKAVIDINQPQVCKNKGCGQTFK 147
>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
KLP2 protein GB:CAA63826 from [Xenopus laevis]
Length = 2008
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 429 ASKIYAVVSDNEISITEDSLRQ-NKTINIRLLKVKNMVKAYNAHVRT 566
ASKIYA + E+ I E S+ + +TINI +V +M + H T
Sbjct: 1641 ASKIYAEQKEEEVKILEISVEELERTINILERRVYDMDEEVKRHRTT 1687
>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
identical to C2H2 zinc-finger protein SERRATE
GI:14486602 from [Arabidopsis thaliana]
Length = 720
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 518 IKSKEYGKSLQCSCPNCGKTFSYASDLYDHLK 613
I+ ++YG C C K F A +Y HLK
Sbjct: 489 IRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLK 520
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 674 LVEHLREKHH*KPFNCNKCAVLLRSYKHYKSTWQT 778
L H + KH KPF+C KC L K W+T
Sbjct: 252 LQTHYKRKHGSKPFSCGKCGKALA----VKGDWRT 282
>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 353
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 539 KSLQCSCPNCGKTFSYASDLYDHLK--GSTDLTRACYVC 649
K + C CGK F Y L++HL+ S + TR C
Sbjct: 74 KKILIRCKECGKGFLYEKCLFNHLQVTHSEESTRRSLFC 112
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 674 LVEHLREKHH*KPFNCNKCAVLLRSYKHYKSTWQT 778
L H + KH KPF+C C LL K W+T
Sbjct: 216 LQTHYKRKHGHKPFSCRLCGKLLA----VKGDWRT 246
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 527 KEYGKSLQCSCPNCGKTFSYASDLYDHLKGSTDLTRACYVCARIMSE-HDLVEH 685
+++ Q C C K ++ SD HLK +C C R+ S +EH
Sbjct: 137 RKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSC-DCGRVFSRVESFIEH 189
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 527 KEYGKSLQCSCPNCGKTFSYASDLYDHLKGSTDLTRACYVCARIMSE-HDLVEH 685
+++ Q C C K ++ SD HLK +C C R+ S +EH
Sbjct: 140 RKHSNHKQWICERCSKGYAVQSDYKAHLKTCGTRGHSC-DCGRVFSRVESFIEH 192
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,112,132
Number of Sequences: 28952
Number of extensions: 429952
Number of successful extensions: 1246
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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