Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120248.Seq
         (806 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5N6 Cluster: Peroxisomal biogenesis factor 3; n=1; B...   169   9e-41
UniRef50_UPI0000D55A7B Cluster: PREDICTED: similar to CG6859-PA;...    56   8e-07
UniRef50_Q9VUL8 Cluster: CG6859-PA; n=2; Sophophora|Rep: CG6859-...    52   1e-05
UniRef50_Q7PR10 Cluster: ENSANGP00000021960; n=2; Culicidae|Rep:...    47   6e-04
UniRef50_UPI00015B4F1C Cluster: PREDICTED: similar to perixosoma...    41   0.032
UniRef50_A6R195 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_A4M812 Cluster: Polynucleotide adenylyltransferase regi...    33   8.5  

>UniRef50_Q2F5N6 Cluster: Peroxisomal biogenesis factor 3; n=1;
           Bombyx mori|Rep: Peroxisomal biogenesis factor 3 -
           Bombyx mori (Silk moth)
          Length = 370

 Score =  169 bits (410), Expect = 9e-41
 Identities = 81/85 (95%), Positives = 81/85 (95%)
 Frame = +2

Query: 2   YFVGQGIEDLIKRIEKTVKRVVEPVLLKKKITLQEVEQMFWSIQTILCTDTVEGDPLKNM 181
           YFVGQGIEDLIKRIEK VKRVVEPV LKKKITLQEVEQMFWSIQTI CTDTVEGDPLKNM
Sbjct: 166 YFVGQGIEDLIKRIEKIVKRVVEPVWLKKKITLQEVEQMFWSIQTIWCTDTVEGDPLKNM 225

Query: 182 VYYLIGHNEINDSKLDTIVKETMDI 256
           VYYLIGHNEINDSK DTIVKETMDI
Sbjct: 226 VYYLIGHNEINDSKWDTIVKETMDI 250



 Score =  132 bits (319), Expect = 1e-29
 Identities = 68/87 (78%), Positives = 68/87 (78%)
 Frame = +1

Query: 256 LESDEXXXXXXXXXXXXXXXXIDEVANLFVTKSIPPSKNQLEVEDHVITSGVLKLKSEPF 435
           LESDE                IDEVANL VTKSIPPSKNQLEVEDHVITSGVLKLKSEPF
Sbjct: 251 LESDEVISVTMSSVSRSFSCVIDEVANLLVTKSIPPSKNQLEVEDHVITSGVLKLKSEPF 310

Query: 436 VDVNKVEIYFVKLLPVINDLITKNSAK 516
           VDVNKVEIYFVKLLPVINDLITKN  K
Sbjct: 311 VDVNKVEIYFVKLLPVINDLITKNMCK 337



 Score = 76.6 bits (180), Expect = 7e-13
 Identities = 35/35 (100%), Positives = 35/35 (100%)
 Frame = +3

Query: 510 CKGDNNIPDLLTQQLTLNEKLKLLGANIYEVFSNS 614
           CKGDNNIPDLLTQQLTLNEKLKLLGANIYEVFSNS
Sbjct: 336 CKGDNNIPDLLTQQLTLNEKLKLLGANIYEVFSNS 370


>UniRef50_UPI0000D55A7B Cluster: PREDICTED: similar to CG6859-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG6859-PA - Tribolium castaneum
          Length = 344

 Score = 56.4 bits (130), Expect = 8e-07
 Identities = 26/80 (32%), Positives = 49/80 (61%)
 Frame = +2

Query: 17  GIEDLIKRIEKTVKRVVEPVLLKKKITLQEVEQMFWSIQTILCTDTVEGDPLKNMVYYLI 196
           G   L + +E   ++V+EPV L K++ L ++E +FWSIQT + T     +P++N+  Y++
Sbjct: 168 GFSRLSRLVETNCRKVLEPVNLTKQLKLSDLEALFWSIQTAVATH--NDNPVENLRQYVL 225

Query: 197 GHNEINDSKLDTIVKETMDI 256
               ++D   + +VKET ++
Sbjct: 226 PELPVSDGIYEKMVKETAEL 245



 Score = 35.1 bits (77), Expect = 2.1
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 525 NIPDLLTQQLTLNEKLKLLGANIYEVF 605
           ++PD   QQL + EKL+LL AN+YE F
Sbjct: 316 SLPDQFLQQLIVYEKLQLLSANVYESF 342


>UniRef50_Q9VUL8 Cluster: CG6859-PA; n=2; Sophophora|Rep: CG6859-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 385

 Score = 52.4 bits (120), Expect = 1e-05
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   YFVGQGIEDLIKRIEKTVKRVVEPVLLKKKITLQEVEQMFWSIQTILCTDTVEGDPLKNM 181
           +    GI DL + I   V  V + + L ++++L ++EQ+FWS+Q  +  DT   DP   M
Sbjct: 166 FITDSGIRDLARYIRTQVIAVTKTIPLSEQLSLSDLEQLFWSLQMAINADT-RRDPNSRM 224

Query: 182 VYYLI-GHNEINDSKLDTIVKETMDI 256
             YL+   N  +   L  +V ET+D+
Sbjct: 225 SKYLLPSQNPSHSPLLQKMVNETLDL 250


>UniRef50_Q7PR10 Cluster: ENSANGP00000021960; n=2; Culicidae|Rep:
           ENSANGP00000021960 - Anopheles gambiae str. PEST
          Length = 379

 Score = 46.8 bits (106), Expect = 6e-04
 Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
 Frame = +2

Query: 2   YFVGQGIEDLIKRIEKTVKRVVEPVLLKKKITLQEVEQMFWSIQTILCTDTVEGDPLKNM 181
           +F+  GI+ LI+ + K V  V++   LK+++TL + E + WSI+  L  +  +G+P+  +
Sbjct: 167 HFMRDGIDRLIEIVRKNVTTVMQRYSLKQQLTLADTETLLWSIEMAL--NNEKGNPIDGI 224

Query: 182 VYYLIGHNEIN----DSKLDTIVKETMDI 256
             Y + +   +    D    T+ +ET+D+
Sbjct: 225 ATYTLPNPGASLTGVDGAFSTMFQETLDV 253


>UniRef50_UPI00015B4F1C Cluster: PREDICTED: similar to perixosomal
           biogenesis factor; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to perixosomal biogenesis factor -
           Nasonia vitripennis
          Length = 360

 Score = 41.1 bits (92), Expect = 0.032
 Identities = 21/79 (26%), Positives = 45/79 (56%)
 Frame = +2

Query: 17  GIEDLIKRIEKTVKRVVEPVLLKKKITLQEVEQMFWSIQTILCTDTVEGDPLKNMVYYLI 196
           G+E L   I++ V+ +     L  K+ L++V+ ++W+I T   +   + +P+KN+  YLI
Sbjct: 176 GVEKLSLLIQEKVEEITASYSLGDKLHLRDVQHIYWAI-TSTVSAVEKSEPVKNISSYLI 234

Query: 197 GHNEINDSKLDTIVKETMD 253
             + I +++ D  + + +D
Sbjct: 235 ADDFIKNNQSDKPLAKLLD 253



 Score = 33.5 bits (73), Expect = 6.4
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 525 NIPDLLTQQLTLNEKLKLLGANIYEVF 605
           ++P    Q+L L+E+LK LGANIYE F
Sbjct: 332 DLPSDWLQRLLLSEELKALGANIYEAF 358


>UniRef50_A6R195 Cluster: Putative uncharacterized protein; n=1;
           Ajellomyces capsulatus NAm1|Rep: Putative
           uncharacterized protein - Ajellomyces capsulatus NAm1
          Length = 1063

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +2

Query: 74  VLLKKKITLQEVEQMFWSIQTILCTDTVEGDPLKNMVYYLIGHNEINDSKLDTIVK 241
           V + +KIT  E     W++  I   D +  DPL+ M+Y   GH+ +N+ +L   ++
Sbjct: 383 VFVTRKITKWESRAKEWNVGFI---DAIGVDPLEEMIYLWNGHSRMNEEELQNSLR 435


>UniRef50_A4M812 Cluster: Polynucleotide adenylyltransferase region;
           n=1; Petrotoga mobilis SJ95|Rep: Polynucleotide
           adenylyltransferase region - Petrotoga mobilis SJ95
          Length = 885

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
 Frame = +2

Query: 17  GIEDLIKRIEKTVKRVVEPVLLKKKITLQEVEQMFWSIQTILCTDTVEGDPLKNMVYYLI 196
           GI+++I +I+K +K    PVL  K I       M   ++TIL  +TVE   + + + +  
Sbjct: 297 GIQEVINKIKKELKSSFVPVLKAKHI-------MSSPVRTILSFETVE---IAHELMFQT 346

Query: 197 GHN---EINDSKLDTIVKETMDI*KVMK 271
           GH+    I+D+KL  IV +  DI K MK
Sbjct: 347 GHSGLPVISDNKLVGIVTK-KDIEKAMK 373


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 655,165,583
Number of Sequences: 1657284
Number of extensions: 12165636
Number of successful extensions: 26409
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26405
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)