Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120248.Seq
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   5.5  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   7.2  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   9.6  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 166  ITFNGVSTQNSLNRPEHLLYFL*SDLFLK 80
            + F+G+ TQ+      H+L F+ S L+LK
Sbjct: 1183 LKFSGIPTQSKKRLEVHMLNFISSTLYLK 1211


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 415 KLKSEPFVDVNK-VEIYFVKLLPVINDLITKNSAKVT 522
           K  +E   D NK  ++ ++ LLP IN +  +NSA  T
Sbjct: 591 KQAAETTNDQNKDKDLLYLNLLPYINSITERNSASPT 627


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 339  ICDQIDTTK*ESIRSRRSCHHKWSIKIEERAF 434
            IC +  T K  S++ R SC  +W +++    F
Sbjct: 2137 ICSKCKTVKQWSLKERCSCSGEWVLQLSPTKF 2168


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 394 VITSGVLKLKSEPFVDVNKVEIYFVKLLPVINDLITKNSAKVTTTFQIY*H 546
           ++   +LK K     D   V +   KL+P+    + KN AK   + + + H
Sbjct: 98  LLARAILKEKRNILQDKTSVNVNVNKLIPIPKKKVLKNRAKSLLSIKSHVH 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,001
Number of Sequences: 5004
Number of extensions: 59169
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)