Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120248.Seq
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    31   1.1  
05_03_0289 - 11688733-11691342                                         28   7.6  
04_03_0500 + 16585157-16585201,16586840-16586978,16587456-165875...    28   7.6  

>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
            3242494-3242836,3244138-3248540,3248928-3249107,
            3249108-3250892,3251055-3252173
          Length = 2727

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/53 (33%), Positives = 33/53 (62%)
 Frame = +1

Query: 367  KNQLEVEDHVITSGVLKLKSEPFVDVNKVEIYFVKLLPVINDLITKNSAKVTT 525
            K ++EVE  +I+SG L  +S+   DVN++ +   +L  ++ND+  K+S   +T
Sbjct: 1171 KKRVEVETALISSGNLYSQSQE--DVNRLTLEIERLNEMLNDMENKSSEYKST 1221


>05_03_0289 - 11688733-11691342
          Length = 869

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 657 PHLYINFNINYAYLCIVSGNFERSSKFYFCETYCQSMS*RFFELII 794
           P   +N N    ++  V GNF    + +FCE      + R F+++I
Sbjct: 293 PDPKVNKNYKLTWVFEVDGNFTYIVRLHFCELLLSKPNQRVFDILI 338


>04_03_0500 +
           16585157-16585201,16586840-16586978,16587456-16587577,
           16588850-16588900,16589289-16589601,16592816-16593162
          Length = 338

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 5   FVGQGIEDLIKRIEKTVKRVVEPVLLKKKITLQEVEQMFWSIQTILCTDTVE 160
           F  + IEDL++++++ +     P  +   + L+ V  + W +QT  C DT E
Sbjct: 77  FPTKEIEDLLQKLDQNIMMNALPRKMDLYLDLKFVRNLAWKMQT--CYDTNE 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,467,766
Number of Sequences: 37544
Number of extensions: 292565
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)