Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120248.Seq
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31167| Best HMM Match : Transposase_35 (HMM E-Value=1.2)            34   0.16 
SB_18662| Best HMM Match : Toxin_27 (HMM E-Value=2)                    29   3.4  
SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_51699| Best HMM Match : SAM_2 (HMM E-Value=1.5)                     28   7.7  

>SB_31167| Best HMM Match : Transposase_35 (HMM E-Value=1.2)
          Length = 169

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = +2

Query: 38  RIEKTVKRVVEPVLLKKKITLQEVEQMFW--SIQTILCTDTVEGDPLKNMVYYLIGHNEI 211
           ++++ VK +V PVLL   I L ++EQ  W  SIQ     D  + + L+ +  + + HN +
Sbjct: 30  KLKEPVKGIV-PVLLDHDIRLYDIEQQTWLSSIQNDNRKDQAQNNKLRTLRKFKLSHN-L 87

Query: 212 NDSKLDTIVKETMDI*KVMK*FQLQCHQLA 301
            D   D    + +D    +  F+L  H+LA
Sbjct: 88  EDYLTDV---KNIDHRIALTKFRLSNHKLA 114


>SB_18662| Best HMM Match : Toxin_27 (HMM E-Value=2)
          Length = 253

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -2

Query: 736 NFEERSKFPETIQRYA*FILKLIYKCGNNILTTNI*HVLNYELLN 602
           N  ER+K P  + R    I  LIYK  NN+   NI  + N    N
Sbjct: 185 NLLERAKLPTLLNRRLQDIAILIYKVHNNLCPPNICGIFNRHSAN 229


>SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 543 LINLECCCHLCTVLSNK-VIDNR*QFNKVNLYFVHINKRLAL 421
           ++N EC CH C    NK  + N+ Q N  +  F++  K L L
Sbjct: 240 ILNYECICHSCYGAPNKGALINKLQKNLSSSSFMYQGKTLTL 281


>SB_51699| Best HMM Match : SAM_2 (HMM E-Value=1.5)
          Length = 442

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 736 NFEERSKFPETIQRYA*FILKLIYKCGNNILTTNI*HVLNYELLN 602
           N  ER+K P  + R    I  L+YK  NN+   NI  + N    N
Sbjct: 76  NLLERAKLPTLLNRRLQDIAILMYKVHNNLCPPNICGIFNRHSAN 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,407,237
Number of Sequences: 59808
Number of extensions: 381778
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)