Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120248.Seq
         (806 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051934-1|AAK93358.1|  385|Drosophila melanogaster LD41491p pro...    52   7e-07
AE014296-2487|AAF49658.1|  385|Drosophila melanogaster CG6859-PA...    52   7e-07

>AY051934-1|AAK93358.1|  385|Drosophila melanogaster LD41491p
           protein.
          Length = 385

 Score = 52.4 bits (120), Expect = 7e-07
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   YFVGQGIEDLIKRIEKTVKRVVEPVLLKKKITLQEVEQMFWSIQTILCTDTVEGDPLKNM 181
           +    GI DL + I   V  V + + L ++++L ++EQ+FWS+Q  +  DT   DP   M
Sbjct: 166 FITDSGIRDLARYIRTQVIAVTKTIPLSEQLSLSDLEQLFWSLQMAINADT-RRDPNSRM 224

Query: 182 VYYLI-GHNEINDSKLDTIVKETMDI 256
             YL+   N  +   L  +V ET+D+
Sbjct: 225 SKYLLPSQNPSHSPLLQKMVNETLDL 250



 Score = 31.5 bits (68), Expect = 1.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 522 NNIPDLLTQQLTLNEKLKLLGANIYEVFSNS 614
           +N+P  L     + EK K LGAN+YE FS++
Sbjct: 355 HNLPTQLLTFYVVAEKTKTLGANVYESFSSA 385


>AE014296-2487|AAF49658.1|  385|Drosophila melanogaster CG6859-PA
           protein.
          Length = 385

 Score = 52.4 bits (120), Expect = 7e-07
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   YFVGQGIEDLIKRIEKTVKRVVEPVLLKKKITLQEVEQMFWSIQTILCTDTVEGDPLKNM 181
           +    GI DL + I   V  V + + L ++++L ++EQ+FWS+Q  +  DT   DP   M
Sbjct: 166 FITDSGIRDLARYIRTQVIAVTKTIPLSEQLSLSDLEQLFWSLQMAINADT-RRDPNSRM 224

Query: 182 VYYLI-GHNEINDSKLDTIVKETMDI 256
             YL+   N  +   L  +V ET+D+
Sbjct: 225 SKYLLPSQNPSHSPLLQKMVNETLDL 250



 Score = 31.5 bits (68), Expect = 1.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 522 NNIPDLLTQQLTLNEKLKLLGANIYEVFSNS 614
           +N+P  L     + EK K LGAN+YE FS++
Sbjct: 355 HNLPTQLLTFYVVAEKTKTLGANVYESFSSA 385


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,565,931
Number of Sequences: 53049
Number of extensions: 563616
Number of successful extensions: 1041
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3777934368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)