Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120248.Seq
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48045-7|CAA88098.1|  329|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AC024205-3|AAF36045.1|  308|Caenorhabditis elegans Hypothetical ...    29   5.2  

>Z48045-7|CAA88098.1|  329|Caenorhabditis elegans Hypothetical
           protein C41C4.1 protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 317 THEKLLLTDDIVTEITSSLSKCPLFL*QLYPISNHLFHCDQLNNTPCFLEDHLQR 153
           T +K+++  D +    S  S   +F  Q YP     ++C    N  CFLE   +R
Sbjct: 149 TFKKIVVIRDPIARFISFFSNKCIFEAQKYPDRKQCYNCQ--GNVTCFLEKQYER 201


>AC024205-3|AAF36045.1|  308|Caenorhabditis elegans Hypothetical
           protein Y73C8B.2 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +2

Query: 59  RVVEPVLLKKKITLQEVEQMFWSIQTILCTDTVEGDPLKNMVYYLIGHNEINDSK 223
           R+ EP LLKK +  Q   + F  ++ +       G P   +V +       ND K
Sbjct: 8   RISEPKLLKKLVKFQAENEQFVELEAVYEDSITSGSPFGTVVAFHGSPGSHNDFK 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,050,488
Number of Sequences: 27780
Number of extensions: 325988
Number of successful extensions: 707
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)