Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120248.Seq
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39030.1 68418.m04723 protein kinase family protein contains ...    29   4.8  
At5g18740.1 68418.m02224 expressed protein predicted proteins - ...    28   6.3  
At1g50710.1 68414.m05702 expressed protein                             28   6.3  
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ...    28   8.4  
At1g23700.1 68414.m02992 protein kinase family protein contains ...    28   8.4  

>At5g39030.1 68418.m04723 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 806

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 666 YINFNINYAYLCIVSGNFERSSKFYFCETYCQSMS*RFFELII 794
           Y+N N N  +L  V   F    + +F E Y    + R F + +
Sbjct: 291 YLNLNFNLTWLFTVDAGFSYLVRLHFFEKYLNKANQRVFSIFL 333


>At5g18740.1 68418.m02224 expressed protein predicted proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 609

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 224 ISNHLFHCDQLNNTPCF 174
           I +H+ HC++L+NT CF
Sbjct: 260 IFSHVIHCNELSNTLCF 276


>At1g50710.1 68414.m05702 expressed protein
          Length = 423

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +2

Query: 59  RVVEPVLLKKKITLQEVEQMFWSIQTILCTDTVEGDPLKNMVYYLIGHNEINDSKLDTIV 238
           RV+E VLL +  T   +  +  +I+  L   T E     N     +   +  D   DTI 
Sbjct: 337 RVLENVLLLETYTPDSISALH-NIRNYLVEATEEASAAYNKAVTRLREYQGVDPHFDTIA 395

Query: 239 KETMDI*KVMK*FQLQCHQL 298
           ++  DI K ++  Q   HQ+
Sbjct: 396 RQYHDIVKKLENMQWTIHQV 415


>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 703

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 645 KILLPHLYINFNINYAYLC-IVSGNFERSSKFYFCETYC 758
           K +L   Y N      Y C I  G  + + +FY C+ YC
Sbjct: 590 KHVLTLFYGNETSTITYWCEICEGTIDPTKRFYVCDEYC 628


>At1g23700.1 68414.m02992 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 473

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +1

Query: 346 TKSIPPSKNQLEVEDHVITSGVLKLKSEPFVDVNKVEIYFVKLLPVINDLITKN 507
           T  + P    + +++ +    V  L +EP + VN V     ++LP++ +++ +N
Sbjct: 337 TAQVLPILQNILIQNDIQRENVEALLTEPAILVNPVSCDTAQVLPIVQNILIQN 390


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,390,989
Number of Sequences: 28952
Number of extensions: 273359
Number of successful extensions: 625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)