Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120247X.Seq
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   6.7  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   6.7  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   8.9  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   8.9  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   8.9  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 550 PVQPPSSFVCSQSIAFTLEGGDGIVVVFLRHNDGDD 443
           P      FV S+++A  L    G V+ +LR N+ DD
Sbjct: 587 PTHGAVQFVPSKTLATILAEYHGSVLAYLRENNPDD 622


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 119 NTREKRQEVRERGIHTADTLLPARR 193
           N REKRQE+ E  ++    +L  R+
Sbjct: 53  NRREKRQELAEEAVYCRSEMLSQRK 77


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 368 WRCAPTFESANRYIAGTPI 424
           W+C  TFE  +RY+    I
Sbjct: 131 WKCVQTFEGHSRYVMSLAI 149


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 443 VISVVVAKKNNHYAVSSFEGEGDTLRAHKTGRWLNRLQA 559
           ++   +AK++N   VS  +  G+ +   K    +NRL+A
Sbjct: 318 IVDYEIAKRHNIDCVSIMDKSGNLINCSKEVNGMNRLKA 356


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 290 ENTAEKVFINRAKR-ILIVSSDGHLAQWRCAPTFES 394
           +NT    F ++ ++ I  VS DG L  W+ +P F++
Sbjct: 190 KNTVVSGFFSKDQQTIYTVSKDGALFVWKYSPLFQA 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,502
Number of Sequences: 5004
Number of extensions: 45027
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)