Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120247X.Seq
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461 30 1.7
08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067... 29 4.0
03_02_0289 - 7115045-7115867,7116373-7116929,7117327-7117544,711... 29 4.0
11_03_0078 - 9662677-9663642,9666589-9666747 28 6.9
07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444... 28 6.9
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 28 6.9
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 28 6.9
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 27 9.2
>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
Length = 353
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 547 PAAGGYAYGELTFPNXTALRE 609
PA GGYA TFP+ ALRE
Sbjct: 27 PAGGGYAGDNATFPSLQALRE 47
>08_02_0468 -
17505905-17506002,17506295-17506424,17506662-17506778,
17506881-17506959,17507546-17507654,17507857-17507969,
17510510-17510570,17511562-17511742,17512903-17512960,
17514292-17514497,17514582-17514671,17514752-17514813,
17514911-17514979,17515330-17515334,17516282-17516454
Length = 516
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 418 RAGDVPVRRLEGRRAPPLRQVPVA*-HYQYALGSVYEDLLSSILVESNVGQFLERR 254
+A +P+R R P ++ A HY Y+L S+YE +L I+ S ++RR
Sbjct: 157 KAATMPIRSRGVRWNKPRYELTAALFHYSYSLQSLYESILQEIM-NSAPSNSIQRR 211
>03_02_0289 -
7115045-7115867,7116373-7116929,7117327-7117544,
7117829-7117928,7118665-7118832
Length = 621
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +2
Query: 356 HLAQWRCAPTFESANRYIAGTPI-VDQRGGVISVVVAKKNNHYAVSSFEG-EGDTLRAHK 529
HL+ WR F +A G+ + +Q+ ++ + + Y G G + H+
Sbjct: 19 HLSSWRVQQPFRAAKGAFMGSSLEAEQQSLIVRTTEPEDVDDYTGDGSVGFSGQPILKHE 78
Query: 530 TGRW 541
TG W
Sbjct: 79 TGNW 82
>11_03_0078 - 9662677-9663642,9666589-9666747
Length = 374
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 41 ENCNV*AHSIKRELQGHSGVDEYSC*NTREKRQEVRERGIHTADTLLPARRAGATR*EHA 220
E C+ I+ +++G GV++ + RE+ VRE +H A+ +P R ++
Sbjct: 188 ERCSRKEELIEEDVEGGEGVNDMADVEVREENDPVREE-VH-AEENVPLREEVHVE-DNV 244
Query: 221 PLLRRVHRRTAAPLEE 268
PL V+ P+ E
Sbjct: 245 PLREEVNVEENVPVRE 260
>07_01_0597 +
4438858-4439847,4439936-4440067,4440397-4441176,
4441359-4441646,4441710-4441808
Length = 762
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -2
Query: 487 DGIVVVFLRHNDGDDAPALVDDGRAGDVPVRRLEGRRAPPLRQVPVA 347
DG V+F+R D D+ V R D P+R RR+ P +PVA
Sbjct: 200 DGDSVIFMRRRDDDELYVGVRRQRTLDKPLRT---RRSRPPTPLPVA 243
>02_02_0279 -
8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 41 ENCNV*AHSIKRELQGHSGVDEYSC*NTREKRQEVRERGIHTADTLLPARRAGATR*EHA 220
E C+ I+ +++G GV++ + RE+ VRE +H A+ +P R ++
Sbjct: 277 ERCSRKEELIEEDVEGGEGVNDMADVEVREENDPVREE-VH-AEENVPLREEVHAE-DNV 333
Query: 221 PLLRRVHRRTAAPLEE 268
PL V+ P+ E
Sbjct: 334 PLREEVNVEENVPVRE 349
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = -2
Query: 172 IGSMDPTLAYFLPFLSCISAGILIDSTMPL*FSFNTVRLDIAVFLENKSEN 20
+G M + +F F +C G+L +S++ F T+R+D+ + + ++N
Sbjct: 524 LGMMRWGVVFFFSFSNCSICGLLYESSVKHIVFFCTIRVDLVLHTFDGNKN 574
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -2
Query: 616 QRARGGRCXSGKSTPRTHSRLQPVQPPSSFVCSQSIAFTLEGGDGIV-VVFLRHNDGDDA 440
QR G S STPR SRL PV+P + + S +A L +G+ HN D
Sbjct: 22 QRLACGHRVSFVSTPRNISRLPPVRPSLAPLVS-FVALPLPRVEGLPNGAESTHNVPHDR 80
Query: 439 PALVD 425
P +V+
Sbjct: 81 PDMVE 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,513,782
Number of Sequences: 37544
Number of extensions: 364008
Number of successful extensions: 1265
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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