Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120247X.Seq
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1606| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_37145| Best HMM Match : ig (HMM E-Value=8e-07)                      28   5.4  
SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)                 28   7.1  
SB_36061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_19362| Best HMM Match : M (HMM E-Value=0.0014)                      27   9.4  

>SB_1606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -2

Query: 427 DDGRAGDVPVRRLEGRRAPPLRQVPV 350
           D+G  G+ P RRL  R AP LR VPV
Sbjct: 65  DEGHKGE-PARRLVFRSAPCLRAVPV 89


>SB_37145| Best HMM Match : ig (HMM E-Value=8e-07)
          Length = 323

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 424 DGRAGDVPVRRLEGRRAPPLRQVPVA*HYQYALGSVYEDLLSSILVESN 278
           D   GD P RR    R      VPV  HYQ ++ +V E   S +++E N
Sbjct: 46  DVLGGDFPCRRFIDLRITARCNVPVTSHYQGSVMNVAEG--SEVMLECN 92


>SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)
          Length = 585

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 24  SDLFSKKTAMSKRTVLNENYKGIVESMSIPAEIHERNGKKYASVGSILPIHCCPPEELE 200
           +D+ S    +  R  L +N+ G     +I  +  ++  +K     S LPI CC P + E
Sbjct: 30  ADVASDHHLIVARLKLKKNWTGGSSHNTITLKDSKKKEEKIPPADSDLPIECCAPTKEE 88


>SB_36061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 424 DGRAGDVPVRRLEGRRAPPLRQVPVA*HYQYALGSVYEDLLSSILVESNVGQ--FLERRS 251
           D R+ D  +RR      PP+ + PV     YAL + +  +   I VES +     +ERR 
Sbjct: 93  DDRSNDPTIRRSSDTEVPPITRNPV---IIYALEAAFVRVACGIDVESQMSDECKIERRR 149

Query: 250 S 248
           S
Sbjct: 150 S 150


>SB_19362| Best HMM Match : M (HMM E-Value=0.0014)
          Length = 722

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 189 EELERRAESTHHYCGVFTDELLRRSRNWPTLDSTRIL 299
           +EL+      HH     TDE+LR+SR    L   +++
Sbjct: 618 KELQDELNEVHHQNDQLTDEILRKSREIENLKMGKLM 654


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,120,559
Number of Sequences: 59808
Number of extensions: 381200
Number of successful extensions: 1023
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)