Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120247X.Seq
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    29   3.6  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    29   3.6  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    29   3.6  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    29   3.6  
AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z74031-17|CAN86923.1|  380|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z74031-16|CAA98452.1|  378|Caenorhabditis elegans Hypothetical p...    28   4.7  
U80027-19|AAC48129.2|  313|Caenorhabditis elegans F-box a protei...    28   6.2  

>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 172  YTAARPKSWSDALRARTTTAACSP 243
            YTA  P  WSD+L  RTT +   P
Sbjct: 3221 YTAEGPGPWSDSLEIRTTGSELGP 3244


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 172  YTAARPKSWSDALRARTTTAACSP 243
            YTA  P  WSD+L  RTT +   P
Sbjct: 3221 YTAEGPGPWSDSLEIRTTGSELGP 3244


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 172  YTAARPKSWSDALRARTTTAACSP 243
            YTA  P  WSD+L  RTT +   P
Sbjct: 3221 YTAEGPGPWSDSLEIRTTGSELGP 3244


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 172  YTAARPKSWSDALRARTTTAACSP 243
            YTA  P  WSD+L  RTT +   P
Sbjct: 3221 YTAEGPGPWSDSLEIRTTGSELGP 3244


>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 154 WDPYCRYTAARPKSW 198
           W PYC Y A+RP  W
Sbjct: 475 WVPYCDYEASRPLGW 489


>Z74031-17|CAN86923.1|  380|Caenorhabditis elegans Hypothetical
           protein F32D8.7b protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = +1

Query: 112 LLKYTRETARSTRAWDPYCRYTAARPKSWSDALRARTTTAACSPT 246
           +  Y RET +    W P CR        + D  + +     C PT
Sbjct: 180 MFTYNRETLQCDEFWFPGCRTAETNANLFEDYQQCQKIADLCKPT 224


>Z74031-16|CAA98452.1|  378|Caenorhabditis elegans Hypothetical
           protein F32D8.7a protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = +1

Query: 112 LLKYTRETARSTRAWDPYCRYTAARPKSWSDALRARTTTAACSPT 246
           +  Y RET +    W P CR        + D  + +     C PT
Sbjct: 178 MFTYNRETLQCDEFWFPGCRTAETNANLFEDYQQCQKIADLCKPT 222


>U80027-19|AAC48129.2|  313|Caenorhabditis elegans F-box a protein
           protein 64 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 284 LDENTAEKVFINRAKRILIVSSDGHLAQWRCAPTFESAN 400
           LD+ + E + ++   +I  ++   HL QW+ A  FE  N
Sbjct: 172 LDDQSLEAIKLSNPSQINQLAQITHLNQWKTAKNFELCN 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,825,790
Number of Sequences: 27780
Number of extensions: 268367
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)