Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120247X.Seq
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 511 YFESTQNWKVVEPAAGGYAYGELTF 585
           ++    +W  + P A G+  GELT+
Sbjct: 433 WYSLASSWPALVPLALGFLAGELTY 457


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 252 LRRSRNWPTLDST 290
           L RSR+W +LD+T
Sbjct: 356 LERSRSWSSLDNT 368


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 562 SRLQPVQPPSSFVCSQSIA 506
           S ++PV P  S VCS  ++
Sbjct: 23  STVEPVDPVKSLVCSPDLS 41


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 21  FSDLFSKKTAMSKRTVLN 74
           FS LF+KK    K  +LN
Sbjct: 691 FSKLFAKKVKKDKDIILN 708


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 204 VAPALRAGSSVSAVWIPRSRTS 139
           +A A   GSS+ A+W+ R+  S
Sbjct: 576 LAGATCLGSSIKAMWLRRALAS 597


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,743
Number of Sequences: 438
Number of extensions: 3226
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)