Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120247X.Seq
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SD...    28   5.8  
At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /...    27   7.7  

>At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 317

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 260 LEELAYVRLDENTAEKVFINRAKRILIVSSDGHLAQWRCAPTFESAN 400
           L  L   R+ +  +E    NR  RI+IVSS+GH   +R    F+  N
Sbjct: 144 LTNLLLERMKKTASES---NREGRIVIVSSEGHRFAYREGVQFDKIN 187


>At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /
           protein kinase, putative nearly identical to IRE
           (incomplete root hair elongation) [Arabidopsis thaliana]
           gi|6729346|dbj|BAA89783
          Length = 1168

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 224 LLRRVHRRTAAPLEELAYVRLDENT---AEKVFINRAKRILIVSSDGHLAQWRCAPTFES 394
           LLR    +     + LA  + D+N+   A+ V +N A+     SS+  ++ W+  P+   
Sbjct: 366 LLREKEIQKINEKQNLAGKQDDQNSNSGADGVEVNTARSTDSTSSNFRMSSWKKLPSAAE 425

Query: 395 ANRYIAGTP 421
            NR +  TP
Sbjct: 426 KNRSLNNTP 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,041,949
Number of Sequences: 28952
Number of extensions: 253941
Number of successful extensions: 671
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)