Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120246.Seq
         (837 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41679 Cluster: Uncharacterized 28.5 kDa protein in PK2...   147   3e-34
UniRef50_O10361 Cluster: Uncharacterized 26.5 kDa protein; n=7; ...    73   1e-11
UniRef50_A0YI23 Cluster: Putative uncharacterized protein; n=1; ...    34   5.1  
UniRef50_UPI00006CB411 Cluster: hypothetical protein TTHERM_0047...    33   8.9  

>UniRef50_P41679 Cluster: Uncharacterized 28.5 kDa protein in
           PK2-LEF7 intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 28.5 kDa
           protein in PK2-LEF7 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 247

 Score =  147 bits (356), Expect = 3e-34
 Identities = 69/82 (84%), Positives = 71/82 (86%), Gaps = 3/82 (3%)
 Frame = +3

Query: 255 CTYTAMLVGYMATFN---EFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKL 425
           CTYTAMLVGYM TFN   E +YLQYW LLSFLMSV LNAPTLWT  KTTEAHEV+YEMKL
Sbjct: 34  CTYTAMLVGYMVTFNDSSELKYLQYWLLLSFLMSVVLNAPTLWTMLKTTEAHEVIYEMKL 93

Query: 426 FQAMYFSNVLLNYVVFSDNQMG 491
           F AMYFSNVLLNYVVF DNQMG
Sbjct: 94  FHAMYFSNVLLNYVVFLDNQMG 115



 Score =  145 bits (352), Expect = 1e-33
 Identities = 66/93 (70%), Positives = 73/93 (78%)
 Frame = +2

Query: 488 GYKFCFCNNLIHCCVXXXXXXXXXXXXGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMG 667
           G  F F NNLIHCCV            GHTMG YTDY+Y KSCYMVILFVSVMS TIVMG
Sbjct: 115 GTNFVFVNNLIHCCVLFMIFVELLILLGHTMGTYTDYQYVKSCYMVILFVSVMSVTIVMG 174

Query: 668 LECLKTKLVDSSLMFNSFMCALYIMIATVWSLK 766
           LECLKTKL+D+SLMFN+F+CALYI+IA +WSLK
Sbjct: 175 LECLKTKLIDNSLMFNAFVCALYIVIAIMWSLK 207



 Score = 69.7 bits (163), Expect = 8e-11
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = +1

Query: 157 MGLFTCCTKYTRLSTDTKVKFPYAALSYINVTL 255
           MGLF CCTKYTRLSTDTK+KFPY ALSYINVTL
Sbjct: 1   MGLFACCTKYTRLSTDTKMKFPYVALSYINVTL 33



 Score = 37.9 bits (84), Expect = 0.31
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +1

Query: 763 KNNLTSFYASNLQSIQVVRF 822
           KNNLTS+Y SNLQSIQVV F
Sbjct: 207 KNNLTSYYVSNLQSIQVVPF 226


>UniRef50_O10361 Cluster: Uncharacterized 26.5 kDa protein; n=7;
           Nucleopolyhedrovirus|Rep: Uncharacterized 26.5 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 243

 Score = 72.5 bits (170), Expect = 1e-11
 Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
 Frame = +3

Query: 255 CTYTAMLVGYMA---TFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKL 425
           C + A++ GY++   TF E ++LQYW +LS  ++  +NA TL+     TEAHE+VYE+K+
Sbjct: 34  CAFGAVVAGYLSAANTFVELQFLQYWLMLSLFVTGLINA-TLFLRQGKTEAHEIVYELKM 92

Query: 426 FQAMYFSNVLLNY 464
             AMYF+N L+N+
Sbjct: 93  LHAMYFANALVNH 105



 Score = 72.1 bits (169), Expect = 2e-11
 Identities = 30/85 (35%), Positives = 47/85 (55%)
 Frame = +2

Query: 512 NLIHCCVXXXXXXXXXXXXGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKL 691
           NL+HCC             GH +G Y+DYRYAK+CYM+ LFVS     I +G   +K+  
Sbjct: 122 NLVHCCALVLLFVELTVLLGHALGTYSDYRYAKACYMLALFVSAAVAVITVGASGMKSAP 181

Query: 692 VDSSLMFNSFMCALYIMIATVWSLK 766
           +  +L+    +   Y+++A VW+ +
Sbjct: 182 LCDNLLVAVVLSIAYLLVAIVWAAR 206



 Score = 46.4 bits (105), Expect = 9e-04
 Identities = 18/33 (54%), Positives = 26/33 (78%)
 Frame = +1

Query: 157 MGLFTCCTKYTRLSTDTKVKFPYAALSYINVTL 255
           M +F  C+ Y RLS +T+ +FP+AA+SY+NVTL
Sbjct: 1   MNVFKRCSGYIRLSNETRARFPFAAMSYVNVTL 33


>UniRef50_A0YI23 Cluster: Putative uncharacterized protein; n=1;
           Lyngbya sp. PCC 8106|Rep: Putative uncharacterized
           protein - Lyngbya sp. PCC 8106
          Length = 216

 Score = 33.9 bits (74), Expect = 5.1
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -1

Query: 789 SVKTSQIIFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPITIVKLITETN 631
           S++TS +IF   TV  ++ K+ IN    +L+ T F+F    P++  K +   N
Sbjct: 6   SLRTSLLIFTFGTVFFVLGKSAINPAPKQLIETPFIFPREVPLSEWKAVQSKN 58


>UniRef50_UPI00006CB411 Cluster: hypothetical protein
           TTHERM_00475020; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00475020 - Tetrahymena
           thermophila SB210
          Length = 274

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 336 FLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYVVFSDNQ 485
           FL+S+AL       A K    +E+ + + +FQ  Y  N+  NY +  +NQ
Sbjct: 4   FLLSLALVTGLASYALKNFSDYELYFPIAIFQISYAFNIYYNYAIRVENQ 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,301,997
Number of Sequences: 1657284
Number of extensions: 14797753
Number of successful extensions: 34326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34317
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72963732758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)