Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120246.Seq
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0209 - 23282848-23284110                                         32   0.65 
03_01_0323 - 2522834-2523229,2524737-2524952                           30   2.6  
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733...    29   3.5  
10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677...    29   4.6  
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    29   4.6  

>05_05_0209 - 23282848-23284110
          Length = 420

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = +3

Query: 285 MATFNEFEYLQYWFLLSFL---MSVALNAPTL-WT 377
           MAT    E+LQ+WF+LS L   ++VALN   + WT
Sbjct: 260 MATILAVEFLQWWFMLSLLPEAIAVALNVAIMAWT 294


>03_01_0323 - 2522834-2523229,2524737-2524952
          Length = 203

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 193 LSTDTKVKFPYAALSYINVTLAPTRPCWWDTWQHSTNLNIYNTGF 327
           + T  K +  Y   SYI + +  +  C+W  W+ ++N +   +GF
Sbjct: 136 IDTSGKKEAIYTVYSYIAIGIILSLNCFWKVWREASNSDEKPSGF 180


>04_03_0927 +
           20871487-20871903,20872667-20872812,20873204-20873301,
           20873378-20873572,20873670-20873797,20873892-20874050,
           20875119-20875223,20875449-20875559,20875653-20875790,
           20875909-20876091,20876362-20876517,20876615-20876738,
           20876820-20877030,20877614-20877729,20877828-20878053,
           20878218-20878311,20879198-20879275,20879822-20879971,
           20880086-20880292,20880584-20880788,20880990-20881096
          Length = 1117

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 473 KHHIIQQHVTKVHGLEQLHFVNYFMGFCGFERR 375
           K + I QH+ ++H   +L F+N F+ F G+  R
Sbjct: 735 KSYDISQHLHEIHESVRLAFLNSFLDFAGYLER 767


>10_02_0202 -
           6770448-6770561,6771185-6771279,6771638-6771686,
           6771795-6771843,6772035-6772228
          Length = 166

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 261 YTAMLVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTA 380
           + A+++G       +    YW LL  L +V LN   +WTA
Sbjct: 53  FGAIVLGAPIGIKYWAATTYWSLLMSLFTVVLNVSAIWTA 92


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 332 QQKPVL*IFKFVECCHVSH 276
           +QKPVL  + F+ CCH SH
Sbjct: 97  RQKPVL--YTFINCCHTSH 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,072,279
Number of Sequences: 37544
Number of extensions: 377946
Number of successful extensions: 760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)