Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120246.Seq
         (837 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)             31   1.2  
SB_14213| Best HMM Match : RVT_1 (HMM E-Value=1.4e-24)                 30   2.0  
SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   3.5  
SB_27038| Best HMM Match : DUF1634 (HMM E-Value=2.9)                   29   4.7  
SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)                 28   8.2  
SB_1234| Best HMM Match : RVT_1 (HMM E-Value=3.1e-08)                  28   8.2  

>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
          Length = 930

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 196 STDTKVKFPYAALSYINVTLAPTRPCWWDTWQH--STNLNIYNTGFCCR 336
           S+    K P + +    ++L+ +  C+        S NLN Y+TG CCR
Sbjct: 338 SSSPSTKPPKSPIRLCRISLSTSPSCYQQISSQCPSLNLNCYSTGICCR 386


>SB_14213| Best HMM Match : RVT_1 (HMM E-Value=1.4e-24)
          Length = 811

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 509 YKNKICTHLIVRKHHIIQQHVTKVHGLEQLHFVNY 405
           Y++K+ T    R  +I ++ +  VHGLE+LH+  Y
Sbjct: 295 YRSKLLTETERRYSNIEREMLAVVHGLEKLHYYAY 329


>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 745 CNSVVFKNNLTSFYASNLQSIQVVRFH 825
           C+S  F  ++ +F    +Q+IQV+RFH
Sbjct: 108 CSSASFNEDIQAFAKQMIQAIQVLRFH 134


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 595 LSICQIMLYGYIVCFSYEFYYCY 663
           L  C    Y Y  C+ Y +YYCY
Sbjct: 467 LRYCYCYCYCYYYCYCYCYYYCY 489



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 604 CQIMLYGYIVCFSYEFYYCY 663
           C    Y Y  C+ Y +YYCY
Sbjct: 474 CYCYYYCYCYCYYYCYYYCY 493


>SB_27038| Best HMM Match : DUF1634 (HMM E-Value=2.9)
          Length = 310

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 626 ILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWS 760
           ++F +V+     MG  C    L + S  F +    L + IAT W+
Sbjct: 55  VVFATVLMTFSAMGFNCFGQSLFEFSSSFTALGTLLQLAIATTWT 99


>SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 397 ASVVLNA-VHKVGAFSATDIKNDNRNQYCKYSNSLNVAMYPTN 272
           A +V+N  +HK G  S   I+ D      KY    +VA+YPTN
Sbjct: 306 APIVINRELHKGGDRSCMHIELDITGSGIKYDAGDHVAVYPTN 348


>SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)
          Length = 269

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +3

Query: 282 YMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEV 407
           Y      F  L     LS ++SVA N   LWT F T   H V
Sbjct: 9   YQENLESFILLSVLSTLSGIVSVAGNFLVLWTIFHTKSLHVV 50


>SB_1234| Best HMM Match : RVT_1 (HMM E-Value=3.1e-08)
          Length = 210

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 321 WFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNY 464
           W  + F+  +  N+P LW     T   EVV + +L  A    N ++ +
Sbjct: 127 WLFVLFINDLECNSPHLWKYVDDTTVSEVVLKGELSSAQGLVNDIIEW 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,086,670
Number of Sequences: 59808
Number of extensions: 520446
Number of successful extensions: 1352
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)