Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120246.Seq
         (837 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1661|AAN13556.2|  488|Drosophila melanogaster CG32853-P...    33   0.64 
AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p pro...    29   6.0  
AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA...    29   6.0  

>AE014297-1661|AAN13556.2|  488|Drosophila melanogaster CG32853-PA
           protein.
          Length = 488

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 309 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLL-NYVVFSDNQ 485
           Y++Y+F +S  +  ++ +  LW  F +   HE  Y   ++    +    +   V+FS NQ
Sbjct: 280 YMKYFFSMSSYLWFSVVSFHLWELFTSLNRHEPQYRFLIYNTFVWCTAAIPTVVIFSMNQ 339

Query: 486 M 488
           M
Sbjct: 340 M 340


>AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p
           protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +3

Query: 246 RDACTYTAMLVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKL 425
           R A  Y+  +VG  A     +   YWF L    ++ LNA   + A+K  E  +     KL
Sbjct: 274 RTALRYSVAIVGLSAMAPVLDVTNYWFALE---TLPLNAYFAYLAYKFHEKSDSGSSRKL 330

Query: 426 FQ 431
           F+
Sbjct: 331 FR 332


>AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA
           protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +3

Query: 246 RDACTYTAMLVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKL 425
           R A  Y+  +VG  A     +   YWF L    ++ LNA   + A+K  E  +     KL
Sbjct: 274 RTALRYSVAIVGLSAMAPVLDVTNYWFALE---TLPLNAYFAYLAYKFHEKSDSGSSRKL 330

Query: 426 FQ 431
           F+
Sbjct: 331 FR 332


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,259,607
Number of Sequences: 53049
Number of extensions: 728731
Number of successful extensions: 1391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3983256888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)