Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120246.Seq
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 834 DRCMKTDHLNTL*I*SVKTSQIIFKDHTVAIIMY--KAHINELNIKLLSTSFVFKHSKPI 661
           D CM  + L +L         ++  D  V +I Y     ++ELN + +S S+VFK +K +
Sbjct: 140 DTCMTAEELKSLKECLQTALSLLPADALVGLITYGRMVQLHELNTQGISRSYVFKGTKEV 199

Query: 660 T 658
           T
Sbjct: 200 T 200


>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical protein
            C44B9.4 protein.
          Length = 1150

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 354  APRTSKTTTETSIVNIQIR*MLPCIPPTWPCRCKRHVNV---RQRSIGKLHFC 205
            A R  + T   +   ++ R     IPP   CRC++H ++   RQ S G+L  C
Sbjct: 1075 AVRRPRLTPFEAAEKLRTRGSSTIIPPHIKCRCQKHSDLQISRQESTGELVRC 1127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,609,015
Number of Sequences: 27780
Number of extensions: 392429
Number of successful extensions: 948
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)