Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120245.Seq
(827 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 23 4.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 6.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.0
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 8.0
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 22.6 bits (46), Expect = 4.6
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 415 IKVMNTN-ITIFTSGSIGLSIWMESQTVDRTKV 320
+K ++ N + +F + LS W E Q++DR +
Sbjct: 307 VKAVSKNGVLLFGLANNTLSCWNEHQSLDRQNI 339
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 827 PDQDERSELFITNIFRTTIFMN 762
PD E+ L +T + T+F+N
Sbjct: 257 PDSGEKLSLGVTILLSLTVFLN 278
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 827 PDQDERSELFITNIFRTTIFMN 762
PD E+ L +T + T+F+N
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLN 241
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 827 PDQDERSELFITNIFRTTIFMN 762
PD E+ L +T + T+F+N
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLN 241
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 827 PDQDERSELFITNIFRTTIFMN 762
PD E+ L +T + T+F+N
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLN 241
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 827 PDQDERSELFITNIFRTTIFMN 762
PD E+ L +T + T+F+N
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLN 241
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 827 PDQDERSELFITNIFRTTIFMN 762
PD E+ L +T + T+F+N
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLN 241
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 827 PDQDERSELFITNIFRTTIFMN 762
PD E+ L +T + T+F+N
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLN 241
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 827 PDQDERSELFITNIFRTTIFMN 762
PD E+ L +T + T+F+N
Sbjct: 288 PDSGEKLTLGVTILLSLTVFLN 309
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 827 PDQDERSELFITNIFRTTIFMN 762
PD E+ L +T + T+F+N
Sbjct: 288 PDSGEKLTLGVTILLSLTVFLN 309
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 798 YNQYFSNNHFYEQSLYISAVKILSI 724
YN Y +NN+ + LY + + I I
Sbjct: 338 YNNYNNNNYNNYKKLYYNIINIEQI 362
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,109
Number of Sequences: 438
Number of extensions: 5094
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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