Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120245.Seq
(827 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 99 3e-21
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 99 3e-21
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 99 3e-21
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 58 5e-09
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 50 2e-06
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 50 2e-06
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 49 4e-06
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 47 2e-05
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 46 3e-05
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 42 5e-04
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 42 7e-04
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 41 0.001
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 40 0.002
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 40 0.002
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 39 0.004
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 38 0.006
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 38 0.008
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 38 0.008
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 37 0.014
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 37 0.014
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 37 0.019
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 36 0.025
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 36 0.025
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 36 0.025
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 36 0.025
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 36 0.025
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 36 0.033
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 36 0.033
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 36 0.043
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 36 0.043
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 36 0.043
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 35 0.057
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 35 0.057
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 35 0.057
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 35 0.057
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 35 0.057
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 35 0.057
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 35 0.057
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 35 0.057
At4g21530.1 68417.m03111 transducin family protein / WD-40 repea... 34 0.10
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 34 0.10
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 34 0.10
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 34 0.10
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 34 0.13
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 34 0.13
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 33 0.18
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 33 0.23
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 33 0.23
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 33 0.23
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 33 0.31
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 33 0.31
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 33 0.31
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 32 0.40
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 32 0.40
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 32 0.53
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 32 0.53
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 32 0.53
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 32 0.53
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 32 0.53
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 32 0.53
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 32 0.53
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 32 0.53
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 32 0.53
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 32 0.53
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 31 0.71
At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / proly... 31 0.71
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 31 0.93
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 31 0.93
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 31 0.93
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 31 0.93
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 31 0.93
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 31 1.2
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 31 1.2
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 31 1.2
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 30 1.6
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 30 1.6
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 30 1.6
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 30 1.6
At2g33720.1 68415.m04133 expressed protein 30 1.6
At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP... 30 1.6
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 30 2.2
At5g14050.1 68418.m01644 transducin family protein / WD-40 repea... 30 2.2
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 30 2.2
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 30 2.2
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 30 2.2
At2g01470.1 68415.m00070 St12p protein (ST12p) / SEC12p protein,... 30 2.2
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 29 2.8
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 29 3.8
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 29 3.8
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 29 3.8
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot... 29 3.8
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 29 5.0
At3g01670.1 68416.m00098 expressed protein 29 5.0
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 28 6.6
At5g05150.1 68418.m00547 transport protein-related contains 2 WD... 28 6.6
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 28 6.6
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 28 6.6
At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost ... 28 6.6
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ... 28 6.6
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 28 8.7
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 28 8.7
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 28 8.7
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 28 8.7
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 28 8.7
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 28 8.7
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 28 8.7
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 28 8.7
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 28 8.7
At2g32620.1 68415.m03982 cellulose synthase family protein simil... 28 8.7
At1g72850.1 68414.m08426 disease resistance protein (TIR-NBS cla... 28 8.7
At1g65030.1 68414.m07371 transducin family protein / WD-40 repea... 28 8.7
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 99.1 bits (236), Expect = 3e-21
Identities = 39/61 (63%), Positives = 53/61 (86%)
Frame = +2
Query: 248 NQKGKFDARFFHLVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYF 427
++ GKF+A+F+ + +EE G VKGHFGPIN+LAF PDGKS++SGGEDGYVR+H+FD +YF
Sbjct: 292 HRAGKFEAKFYDTILQEEIGGVKGHFGPINALAFSPDGKSFSSGGEDGYVRLHHFDSNYF 351
Query: 428 D 430
+
Sbjct: 352 N 352
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/75 (53%), Positives = 51/75 (68%)
Frame = +3
Query: 30 HTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVL 209
H IT + + D + F+T S D TAKL+D +L L+K Y T PVN+ A+SP+L+HVVL
Sbjct: 219 HKEAITSLCKAADDSHFLTGSHDKTAKLWDMRTLTLIKTYTTVVPVNAVAMSPLLNHVVL 278
Query: 210 GGGQDAMEVTTTSTR 254
GGGQDA VTTT R
Sbjct: 279 GGGQDASAVTTTDHR 293
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAAL 182
G+++ + + H+ + +SRD + IT S D TAKL+D S + L +K P S
Sbjct: 69 GERLGTYRGHSGAVWCCDISRDSSRLITGSADQTAKLWDVKSGKELFTFKFGAPARSVDF 128
Query: 183 SPILDHVVL 209
S + DH+ +
Sbjct: 129 S-VGDHLAV 136
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +3
Query: 21 VKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYK 152
+K H +T ++ +R+G + + +KDHT ++ ++ E L Y+
Sbjct: 33 MKGHERPLTFLRYNRNGDLLFSCAKDHTPTVWFADNGERLGTYR 76
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 99.1 bits (236), Expect = 3e-21
Identities = 39/61 (63%), Positives = 53/61 (86%)
Frame = +2
Query: 248 NQKGKFDARFFHLVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYF 427
++ GKF+A+F+ + +EE G VKGHFGPIN+LAF+PDGKS++SGGEDGYVR+H+FD YF
Sbjct: 265 HRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDSDYF 324
Query: 428 D 430
+
Sbjct: 325 N 325
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/75 (54%), Positives = 51/75 (68%)
Frame = +3
Query: 30 HTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVL 209
H IT + + D + F+T S D TAKL+D +L LLK Y T PVN+ +LSP+L+HVVL
Sbjct: 192 HKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSPLLNHVVL 251
Query: 210 GGGQDAMEVTTTSTR 254
GGGQDA VTTT R
Sbjct: 252 GGGQDASAVTTTDHR 266
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNS 173
G+++ + + H + +SRD + IT S D TAKL+D S + L +K P S
Sbjct: 42 GERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRS 98
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 21 VKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYK 152
+K H +T ++ +R+G + + +KDHT L+ ++ E L Y+
Sbjct: 6 MKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYR 49
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 99.1 bits (236), Expect = 3e-21
Identities = 39/61 (63%), Positives = 53/61 (86%)
Frame = +2
Query: 248 NQKGKFDARFFHLVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYF 427
++ GKF+A+F+ + +EE G VKGHFGPIN+LAF+PDGKS++SGGEDGYVR+H+FD YF
Sbjct: 265 HRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDSDYF 324
Query: 428 D 430
+
Sbjct: 325 N 325
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/75 (54%), Positives = 51/75 (68%)
Frame = +3
Query: 30 HTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVL 209
H IT + + D + F+T S D TAKL+D +L LLK Y T PVN+ +LSP+L+HVVL
Sbjct: 192 HKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSPLLNHVVL 251
Query: 210 GGGQDAMEVTTTSTR 254
GGGQDA VTTT R
Sbjct: 252 GGGQDASAVTTTDHR 266
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNS 173
G+++ + + H + +SRD + IT S D TAKL+D S + L +K P S
Sbjct: 42 GERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRS 98
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 21 VKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYK 152
+K H +T ++ +R+G + + +KDHT L+ ++ E L Y+
Sbjct: 6 MKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYR 49
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/58 (48%), Positives = 38/58 (65%)
Frame = +3
Query: 30 HTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHV 203
H IT + + D + F+T S D TAKL+D +L LLK Y T PVN+ +LSP+L+HV
Sbjct: 192 HKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSPLLNHV 249
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNS 173
G+++ + + H + +SRD + IT S D TAKL+D S + L +K P S
Sbjct: 42 GERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRS 98
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 21 VKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYK 152
+K H +T ++ +R+G + + +KDHT L+ ++ E L Y+
Sbjct: 6 MKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYR 49
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = +2
Query: 272 RFFHLVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
R F EE G KGH GP++ + F P G SYASG EDG +R+
Sbjct: 253 RVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRI 296
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +3
Query: 9 KIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSP 188
KI E +T ++S+DG +IT + T K +D N L+K Y + SA+L P
Sbjct: 179 KIVQTLETKSPVTSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEP 237
Query: 189 ILDHVVLGGGQD 224
+ GG+D
Sbjct: 238 KSGEKFVAGGED 249
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 302 FGRVKGHFGPIN--SLAFHP-DGKSYASGGEDGYVRVHNF 412
FG VK + P N S + P G+ + +GGED +VRV +F
Sbjct: 218 FGLVKSYDMPCNIESASLEPKSGEKFVAGGEDMWVRVFDF 257
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = +2
Query: 272 RFFHLVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
R F EE G KGH GP++ + F P G SYASG EDG +R+
Sbjct: 253 RVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRI 296
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +3
Query: 9 KIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSP 188
KI E +T ++S+DG +IT + T K +D N L+K Y + SA+L P
Sbjct: 179 KIVQTLETKSPVTSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEP 237
Query: 189 ILDHVVLGGGQD 224
+ GG+D
Sbjct: 238 KSGEKFVAGGED 249
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 302 FGRVKGHFGPIN--SLAFHP-DGKSYASGGEDGYVRVHNF 412
FG VK + P N S + P G+ + +GGED +VRV +F
Sbjct: 218 FGLVKSYDMPCNIESASLEPKSGEKFVAGGEDMWVRVFDF 257
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 272 RFFHLVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
R F +E G KGH GP++ + F P G+SYASG EDG +R+
Sbjct: 253 RLFDFHTGKEIGCNKGHHGPVHCVRFAPTGESYASGSEDGTIRI 296
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +3
Query: 9 KIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSP 188
KI E +T ++S+DG +IT + T K +D N L+K Y + SA+L P
Sbjct: 179 KIVQTLETKSPVTSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEP 237
Query: 189 ILDHVVLGGGQD 224
+ + GG+D
Sbjct: 238 KSGNKFVAGGED 249
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2
Query: 296 EEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
EE G KGH GP++ + + P G+SY SG EDG VR+
Sbjct: 256 EEIGCNKGHHGPVHCVRYAPGGESYTSGSEDGTVRI 291
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = +3
Query: 6 KKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALS 185
K +H++ E +T ++S+DG +IT + + K +D + LLK Y V SA+L
Sbjct: 174 KIVHTL-ETKSPVTSAEVSQDGR-YITTADGSSVKFWDAKNFGLLKSYDMPCNVESASLE 231
Query: 186 PILDHVVLGGGQD 224
P + + GG+D
Sbjct: 232 PKHGNTFIAGGED 244
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLEL---LKEYKTERPVN- 170
GK + V H+ +T + LSR+G +T+ +D+ +FDT +LE+ L+ N
Sbjct: 389 GKLLSEVAGHSSAVTSVSLSRNGNRILTSGRDNVHNVFDTRTLEICGTLRASGNRLASNW 448
Query: 171 -SAALSPILDHVVLGGGQDAMEVTTTSTRRVNSMLVSST 284
+ +SP D+V G ++ V + S + S+L T
Sbjct: 449 SRSCISPDDDYVAAGSADGSVHVWSLSKGNIVSILKEQT 487
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 66 DGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPI-LDHVVLGGGQDAMEV 236
D MFIT S DH K++DTN+ +++ ++K V A+S + + H ++ G D ++V
Sbjct: 115 DTGMFITGSFDHYVKVWDTNTSQVVVDFKMPGKVYRTAMSSMAMSHTLIAAGTDDVQV 172
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +2
Query: 308 RVKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
++ GH G I +L F PDGK A+GGEDG V++
Sbjct: 193 KINGHKGKIWTLKFSPDGKYLATGGEDGVVKI 224
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYK-------TER 161
GK + + HT + + DG+ ITAS D T K++D+ + + L+ +K T+
Sbjct: 337 GKLLKEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTTDCLQTFKPPPPLRGTDA 396
Query: 162 PVNSAALSP-ILDHVVLGGGQDAMEVTTTSTRRVNS 266
VNS L P +H+V+ ++ + T + V S
Sbjct: 397 SVNSIHLFPKNTEHIVVCNKTSSIYIMTLQGQVVKS 432
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERP-VNSAA 179
G I H+ +T + SRDG+ ++ S D TA++ S +LLKE++ VN A
Sbjct: 295 GVCIRRFDAHSQGVTSLSFSRDGSQLLSTSFDQTARIHGLKSGKLLKEFRGHTSYVNHAI 354
Query: 180 LSPILDHVVLGGGQDAMEVTTTST 251
+ ++ ++V + T
Sbjct: 355 FTSDGSRIITASSDCTVKVWDSKT 378
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +3
Query: 6 KKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALS 185
K + + HT +ITD+ S DG I++S D + +++D + + + P+ + +LS
Sbjct: 548 KMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWDVILAKQIDGVHVDVPITALSLS 607
Query: 186 PILD 197
P +D
Sbjct: 608 PNMD 611
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 263 FDARFFHLVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
F R + +V + +GH I L F DGK S DG +R+
Sbjct: 537 FVIRLYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRI 583
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTE-RPVNSAA 179
G+++ S+ H + + ++ +++G +TASKD KL+D +++ L+ ++ + V S A
Sbjct: 300 GRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYDIRTMKELQSFRGHTKDVTSLA 359
Query: 180 LSPILDHVVLGGGQD 224
P + + G D
Sbjct: 360 WHPCHEEYFVSGSSD 374
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 296 EEFGRVKGHFGPINSLAFHPDGKSY-ASGGEDGYV 397
+E +GH + SLA+HP + Y SG DG +
Sbjct: 343 KELQSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSI 377
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 12 IHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKT-ERPVNSAALSP 188
I + K HT I+ ++ S DG ++ D+ K++D + +LL E+K E P+ S P
Sbjct: 84 IQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHP 143
Query: 189 ILDHVVLGGGQD 224
L+ ++ G D
Sbjct: 144 -LEFLLATGSAD 154
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 314 KGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
KGH I+++ F PDG+ SGG D V+V
Sbjct: 88 KGHTRGISTIEFSPDGRWVVSGGLDNVVKV 117
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +2
Query: 272 RFFHLVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFD 415
+F+ L E G + + ++AFHPDG++ G +DG ++V++++
Sbjct: 158 KFWDLETFELIGTTRPEATGVRAIAFHPDGQTLFCGLDDG-LKVYSWE 204
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 66 DGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPI-LDHVVLGGGQDAMEV 236
D +FIT S DH K++DTN+ + + ++K V A+S + + H ++ G + ++V
Sbjct: 115 DTGLFITGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQV 172
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTER--PVNSA 176
GK + +K H+ I+ + +RDG++ ++AS D + K++D LK ++ V+ A
Sbjct: 160 GKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGTCLKTLIDDKSPAVSFA 219
Query: 177 ALSP 188
SP
Sbjct: 220 KFSP 223
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAAL 182
GK + + H + D+ S DG+ F+TA D K +DT + +++ + T + L
Sbjct: 316 GKCMRTYMGHAKAVRDICFSNDGSKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKL 375
Query: 183 SPILD--HVVLGGGQD 224
+P D +++L G D
Sbjct: 376 NPDDDKQNILLAGMSD 391
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 12 IHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKT-ERPVNSAALSP 188
IH+ K HT + ++ + DG ++ +D+ K++D + +LL E+K+ E + S P
Sbjct: 229 IHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHP 288
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 314 KGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
KGH +N L F PDG+ SGGED V+V
Sbjct: 233 KGHTRGVNVLRFTPDGRWIVSGGEDNVVKV 262
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 15 HSVKEHTHQITDMQLSRDG--TMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSP 188
H+ EHT +TD+ + G + I++S+D T K++ + +LLK +N+ AL P
Sbjct: 167 HNFNEHTMSVTDIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDP 226
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDY 433
GH+ + L F D SG +DG +RV + + + D+
Sbjct: 118 GHYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDF 156
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 36.7 bits (81), Expect = 0.019
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 311 VKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
+K H G I ++ F DGK AS GEDG VRV
Sbjct: 217 IKAHDGAILAMKFSNDGKFLASSGEDGIVRV 247
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 311 VKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
++ H G I ++ F PDG+ AS GEDG +RV
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRV 277
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 311 VKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
++ H G I ++ F PDG+ AS GEDG +RV
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRV 277
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 12 IHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKT-ERPVNSAALSP 188
IH+ K HT + ++ + DG ++ +D+ K++D + +LL E+K+ E + S P
Sbjct: 136 IHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHP 195
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 314 KGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
KGH +N L F PDG+ SGGED V+V
Sbjct: 140 KGHTRGVNVLRFTPDGRWVVSGGEDNIVKV 169
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 12 IHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKT-ERPVNSAALSP 188
IH+ K HT + ++ + DG ++ +D+ K++D + +LL E+K+ E + S P
Sbjct: 136 IHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHP 195
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 314 KGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
KGH +N L F PDG+ SGGED V+V
Sbjct: 140 KGHTRGVNVLRFTPDGRWVVSGGEDNIVKV 169
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 36.3 bits (80), Expect = 0.025
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEY-KTERPVNSAA 179
G + + + HT + DGT F++ D KL++ N+ E + Y + E V + A
Sbjct: 573 GSCLKTFEGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTSECIATYDQHEDKVWALA 632
Query: 180 LSPILDHVVLGGGQDAMEVTTTST 251
+ + + GGG + + ST
Sbjct: 633 VGKKTEMIATGGGDAVINLWHDST 656
Score = 35.1 bits (77), Expect = 0.057
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 314 KGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE*LICNTLVFHKII 493
KGH GP+ +A H G A+ G D V V + D + + F ++ + ++++FH
Sbjct: 99 KGHEGPVMGMACHASGGLLATAGADRKVLVWDVDGGFCTHYFRGHKG--VVSSILFHPDS 156
Query: 494 NK 499
NK
Sbjct: 157 NK 158
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 35.9 bits (79), Expect = 0.033
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 30 HTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKT--ERPVNSAALS 185
H ++ + LSRDGT+ + S D T K++ T + L+ + + +N+ ALS
Sbjct: 164 HVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFTNAHDDAINAVALS 217
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 35.9 bits (79), Expect = 0.033
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 326 GPINSLAFHPDGKSYASGGEDGYVRVHNF 412
G INS+AF DG A+ G DGY+R+ +F
Sbjct: 304 GSINSIAFSNDGAHLATVGRDGYLRIFDF 332
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 35.5 bits (78), Expect = 0.043
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 329 PINSLAFHPDGKSYASGGEDGYVRV 403
P+NS+AFHP ++A+GG DG+V +
Sbjct: 243 PVNSIAFHPIYGTFATGGCDGFVNI 267
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 35.5 bits (78), Expect = 0.043
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 326 GPINSLAFHPDGKSYASGGEDGYVRVHNF 412
G INS+AF DG A+ G DGY+R+ +F
Sbjct: 304 GAINSIAFSNDGAYLATVGRDGYLRIFDF 332
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 311 VKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFD 415
VK ++G + A+ DGK +GGED V+V + +
Sbjct: 341 VKSYYGALLCCAWSMDGKYLLTGGEDDLVQVWSME 375
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 35.5 bits (78), Expect = 0.043
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 329 PINSLAFHPDGKSYASGGEDGYVRV 403
P+N++AFHP ++ASGG DG+V +
Sbjct: 242 PVNAIAFHPIYGTFASGGCDGFVNI 266
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +3
Query: 6 KKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALS 185
KK+ + H + D++ S+ G ++ D T++LFD + +K + V
Sbjct: 196 KKVRAFLHHNAPVKDVKWSKQGLSLLSCGYDCTSRLFDVERGVETQSFKEDEVVGVVKFH 255
Query: 186 PILDHVVLGGG 218
P +V L GG
Sbjct: 256 PDNCNVFLSGG 266
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 299 EFGRVKGHF--GPINSLAFHPDGKSYASGGEDGYVRVHNF 412
++ R +GH+ G F PDG++ ASG DG V ++++
Sbjct: 376 KYKRFEGHWVAGFPIKCNFSPDGETLASGSSDGSVYMYDY 415
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 35.1 bits (77), Expect = 0.057
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYVRVHN 409
GH G +N++ F PDG + +G +DG R+++
Sbjct: 246 GHEGDVNTVKFFPDGYRFGTGSDDGTCRLYD 276
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.1 bits (77), Expect = 0.057
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYVRVHN 409
GH G +N++ F PDG + +G +DG R+++
Sbjct: 184 GHEGDVNTVKFFPDGYRFGTGSDDGTCRLYD 214
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 35.1 bits (77), Expect = 0.057
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYVRVHN 409
GH G +N++ F PDG + +G +DG R+++
Sbjct: 246 GHEGDVNTVKFFPDGYRFGTGSDDGTCRLYD 276
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 35.1 bits (77), Expect = 0.057
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 299 EFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQS 421
+ +KGH + L F DGKS A+ DG +RV D +
Sbjct: 78 DLNTLKGHGDAVTGLCFSSDGKSLATACADGVIRVFKLDDA 118
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 308 RVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSY 424
++KGH + L F P+ + + +DG +RV N + Y
Sbjct: 284 QLKGHKSAVTWLCFSPNSEQIITASKDGSIRVWNINVRY 322
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 35.1 bits (77), Expect = 0.057
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYV 397
GH G +N++A PDG ASGG+DG +
Sbjct: 191 GHSGYLNTVAVSPDGSLCASGGKDGVI 217
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 30 HTHQITDMQLSRDGTMFITASKDHTAKLFDT 122
HT + + S D ++AS+D T KL++T
Sbjct: 104 HTKDVLSVAFSTDNRQIVSASRDRTIKLWNT 134
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 35.1 bits (77), Expect = 0.057
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYV 397
GH G +N++A PDG ASGG+DG +
Sbjct: 191 GHSGYLNTVAVSPDGSLCASGGKDGVI 217
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 30 HTHQITDMQLSRDGTMFITASKDHTAKLFDT 122
HT + + S D ++AS+D T KL++T
Sbjct: 104 HTKDVLSVAFSTDNRQIVSASRDRTIKLWNT 134
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 35.1 bits (77), Expect = 0.057
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYN 448
GH G ++++A PDG ASGG+DG V + + + Y+ + N
Sbjct: 192 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 235
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 30 HTHQITDMQLSRDGTMFITASKDHTAKLFDT 122
HT + + S D ++AS+D T KL++T
Sbjct: 104 HTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 134
>At4g21530.1 68417.m03111 transducin family protein / WD-40 repeat
family protein contains 1 WD-40 repeat (PF00400);
similar to anaphase-promoting complex subunit 4
GI:6180011 [Homo sapiens]; supported by EST GB:AU237382
Length = 510
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 329 PINSLAFHPDGKSYASGGEDGYVRVHNFD 415
P+ SL + PDGK+ A G EDG + +H+ +
Sbjct: 66 PVTSLCWRPDGKAIAVGLEDGTISLHDVE 94
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 314 KGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
+GH P+ S+ F P+G ASGGED R+
Sbjct: 420 QGHIKPVFSVNFSPNGYHLASGGEDNQCRI 449
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 21 VKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTN 125
+K+H + TD+ S TAS D TAKL+ T+
Sbjct: 294 LKDHKERATDVVFSPVDDCLATASADRTAKLWKTD 328
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 284 LVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFD 442
+ ++EF H G I ++ F PDGK AS GED VRV + + T++
Sbjct: 208 MCIDQEFS---AHDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYE 257
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 284 LVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFD 442
+ ++EF H G I ++ F PDGK AS GED VRV + + T++
Sbjct: 208 MCIDQEFS---AHDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYE 257
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/92 (23%), Positives = 37/92 (40%)
Frame = +3
Query: 30 HTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVL 209
HT+ + + D + S+D T K++D + KEY++ VN+ L P ++
Sbjct: 77 HTNNVMAVGFQCDAKWMYSGSEDGTVKIWDLRAPGCQKEYESVAAVNTVVLHPNQTELIS 136
Query: 210 GGGQDAMEVTTTSTRRVNSMLVSST*CLKRSL 305
G + V + LV RSL
Sbjct: 137 GDQNGNIRVWDLRANSCSCELVPEVDTAVRSL 168
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +3
Query: 18 SVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTE 158
S +EH++ + ++ + DG+ FIT S D ++D + E+L E ++
Sbjct: 182 SSREHSNFVNCVRFAPDGSKFITVSSDKKGIIYDGKTCEILGELSSD 228
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 9 KIHSV-KEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTE 158
K HS +EH++ + ++ S DGT FIT S D ++D + + + E +E
Sbjct: 42 KFHSSHREHSNFVNCIRYSPDGTKFITVSSDKKGMIYDGKTGDKVGELASE 92
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 33.1 bits (72), Expect = 0.23
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 6 KKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKT 155
K+ H +K H + + + DG +T KD T +L++ + L+K YK+
Sbjct: 9 KEAHILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKS 58
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 51 MQLSRDGTMFITASKDHTAKLFDTNSLELLKEYK--TERPVNSAALSPILDHVVLGGGQD 224
+ +S DG + D T +L D + ELL+ YK + + D V+GG +D
Sbjct: 190 ISISNDGNCVLAGCLDSTLRLLDRTTGELLQVYKGHISKSFKTDCCLTNSDAHVIGGSED 249
Query: 225 AM 230
+
Sbjct: 250 GL 251
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 33.1 bits (72), Expect = 0.23
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +2
Query: 320 HFGPINSLAFHPDGKSYASGGEDGYVRV 403
H GP++S+AFHP+G A+ G++ +++
Sbjct: 280 HPGPVSSVAFHPNGHLMATSGKERKIKI 307
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 311 VKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 454
++GH +++++FHP+ +G EDG VR+ + + T +Y E
Sbjct: 225 LEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 66 DGTMFITASKDHTAKLFD--TNSLELLKEYKTERPVNSAALSPILDHVVLGGGQDAMEVT 239
D IT S DHTAK++D T S E T V++ + P L ++ G + +
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN-VSAVSFHPELPIIITGSEDGTVRIW 256
Query: 240 TTSTRRVNSML 272
+T R+ + L
Sbjct: 257 HATTYRLENTL 267
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 308 RVKGHFGPINSLAFHP-DGKSYASGGEDGYVRVHN 409
+++GH P+ SL F P D + SG +DG+V +H+
Sbjct: 195 QLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHD 229
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFD 415
GH + +LA HP G AS D +VRV + D
Sbjct: 58 GHSLGVAALAAHPSGIIAASSSIDSFVRVFDVD 90
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 311 VKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYT 436
+KGH GP+ L FHP+G+ AS G V +T
Sbjct: 142 LKGHKGPVTGLDFHPNGELLASIDTTGTVLCWELQNGVVSFT 183
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 21 VKEHTHQITDMQLSRDGTMFITASKDHTAKLF 116
++ H +T + LS D T+ + S DH KL+
Sbjct: 58 LRHHQDGVTSLALSNDSTLLASGSIDHCVKLY 89
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 311 VKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 454
++GH ++++ FHP+ +G EDG VR+ + + T +Y E
Sbjct: 225 LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 66 DGTMFITASKDHTAKLFD--TNSLELLKEYKTERPVNSAALSPILDHVVLGGGQDAMEVT 239
D IT S DHTAK++D T S E T V++ P L ++ G + +
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN-VSAVCFHPELPIIITGSEDGTVRIW 256
Query: 240 TTSTRRVNSML 272
+T R+ + L
Sbjct: 257 HATTYRLENTL 267
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQS 421
GH ++ LAF DG+ ASGG DG V++ FD S
Sbjct: 111 GHKDSVSCLAFSYDGQLLASGGLDGVVQI--FDAS 143
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 32.3 bits (70), Expect = 0.40
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 314 KGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYN 448
KGH I+++ F PDG+ SGG D V+V + + F ++
Sbjct: 139 KGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKFH 183
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYV 397
GH + SLA PDG+ ASG EDG +
Sbjct: 539 GHRSMVLSLAMSPDGRYMASGDEDGTI 565
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 24 KEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTER 161
K+H + D+ S G F+T S D + ++F N + Y T+R
Sbjct: 276 KDHVSAVMDIDFSPTGREFVTGSYDRSVRIFPYNGGHSREIYHTKR 321
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 454
GH ++++ FHP+ +G EDG VR+ + + T +Y E
Sbjct: 227 GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 66 DGTMFITASKDHTAKLFDTNSLELLKEYKTE-RPVNSAALSPILDHVVLGGGQDAMEVTT 242
D IT S DHTAK++D + ++ V++ P L ++ G + +
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
Query: 243 TSTRRVNSML 272
+T R+ + L
Sbjct: 258 ATTYRLENTL 267
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 454
GH ++++ FHP+ +G EDG VR+ + + T +Y E
Sbjct: 227 GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 66 DGTMFITASKDHTAKLFDTNSLELLKEYKTE-RPVNSAALSPILDHVVLGGGQDAMEVTT 242
D IT S DHTAK++D + ++ V++ P L ++ G + +
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
Query: 243 TSTRRVNSML 272
+T R+ + L
Sbjct: 258 ATTYRLENTL 267
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 454
GH ++++ FHP+ +G EDG VR+ + + T +Y E
Sbjct: 227 GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 66 DGTMFITASKDHTAKLFDTNSLELLKEYKTE-RPVNSAALSPILDHVVLGGGQDAMEVTT 242
D IT S DHTAK++D + ++ V++ P L ++ G + +
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
Query: 243 TSTRRVNSML 272
+T R+ + L
Sbjct: 258 ATTYRLENTL 267
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 24 KEHTHQITDMQLSRDGTMFITASKDHTAKLFDTN 125
+EH H ITD++ + T T+S D T K++D +
Sbjct: 547 EEHAHIITDVRFRPNSTQLATSSFDKTIKIWDAS 580
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 24 KEHTHQITDMQLSRDGTMFITASKDHTAKLFDTN 125
+EH H ITD++ + T T+S D T K++D +
Sbjct: 549 EEHAHIITDVRFRPNSTQLATSSFDKTIKIWDAS 582
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 24 KEHTHQITDMQLSRDGTMFITASKDHTAKLFDTN 125
+EH H ITD++ + T T+S D T K++D +
Sbjct: 549 EEHAHIITDVRFRPNSTQLATSSFDKTIKIWDAS 582
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 24 KEHTHQITDMQLSRDGTMFITASKDHTAKLFDTN 125
+EH H ITD++ + T T+S D T K++D +
Sbjct: 549 EEHAHIITDVRFRPNSTQLATSSFDKTIKIWDAS 582
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 24 KEHTHQITDMQLSRDGTMFITASKDHTAKLFDTN 125
+EH H ITD++ + T T+S D T K++D +
Sbjct: 549 EEHAHIITDVRFRPNSTQLATSSFDKTIKIWDAS 582
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYN 448
GH P+ SLAF P+G+ ASG D + + + + T+ N
Sbjct: 539 GHREPVYSLAFSPNGEYIASGSLDKSIHIWSIKEGKIVKTYTGN 582
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 317 GHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYF 427
GH G +N + + P G AS +D ++ N QS F
Sbjct: 446 GHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTF 482
>At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / prolyl
endopeptidase, putative / post-proline cleaving enzyme,
putative similar to SP|P48147 Prolyl endopeptidase (EC
3.4.21.26) (Post-proline cleaving enzyme) {Homo
sapiens}; contains Pfam profiles PF00326: prolyl
oligopeptidase family, PF02897: Prolyl oligopeptidase,
N-terminal beta-propeller domain
Length = 731
Score = 31.5 bits (68), Expect = 0.71
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 12 IHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTERPV---NSAAL 182
+H+VK Q TD+ TM +TA DH ++ +S +LL + E + NS
Sbjct: 631 LHNVKRPWEQKTDLFFQYPSTMLLTA--DHDDRVVPLHSYKLLATMQYELGLSLENSPQT 688
Query: 183 SPILDHVVLGGGQDA 227
+PI+ + + G A
Sbjct: 689 NPIIARIEVKAGHGA 703
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 31.1 bits (67), Expect = 0.93
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 296 EEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
+ G +KGH + A+HP+G ++A+G +D R+
Sbjct: 310 QTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRI 345
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 48 DMQLSRDGTM-FITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHV-VLGGGQ 221
D+ + G + F+ ++ D + FD +L++ ++ PVN ++LSP V V+G
Sbjct: 240 DIYRNSSGALHFMASNNDCGVRDFDMERYKLVQLFRYLWPVNHSSLSPDGKLVAVVGDDP 299
Query: 222 DAMEVTTTSTRRVNSM 269
D + V T++ + + ++
Sbjct: 300 DGLLVDTSNGQTIGTL 315
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 31.1 bits (67), Expect = 0.93
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 296 EEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
+ G +KGH + A+HP+G ++A+G +D R+
Sbjct: 304 QTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRI 339
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 48 DMQLSRDGTM-FITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHV-VLGGGQ 221
D+ + G + F+ ++ D + FD +L++ ++ PVN ++LSP V V+G
Sbjct: 234 DIYRNSSGALHFMASNNDCGVRDFDMERYKLVQLFRYLWPVNHSSLSPDGKLVAVVGDDP 293
Query: 222 DAMEVTTTSTRRVNSM 269
D + V T++ + + ++
Sbjct: 294 DGLLVDTSNGQTIGTL 309
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 314 KGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
+GH + S+ F P+G ASGGED R+
Sbjct: 169 QGHIKQVLSVDFSPNGYHLASGGEDNQCRI 198
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 31.1 bits (67), Expect = 0.93
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 314 KGHFGPINSLAFHPDGKSYASGGEDGYVRVHN 409
+GH+ +N + + PD + A+G +D V+V N
Sbjct: 346 QGHYFDVNCVTYSPDSQLLATGADDNKVKVWN 377
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 320 HFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 454
H + ++AF PDGK AS DG + + + YT + R+
Sbjct: 518 HNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEGVLMYTIEGRRD 562
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 31.1 bits (67), Expect = 0.93
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 314 KGHFGPINSLAFHPDGKSYASGGEDGYVRVHN 409
+GH+ +N + + PD + A+G +D V+V N
Sbjct: 386 QGHYFDVNCVTYSPDSQLLATGADDNKVKVWN 417
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 320 HFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE 454
H + ++AF PDGK AS DG + + + YT + R+
Sbjct: 558 HNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEGVLMYTIEGRRD 602
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 308 RVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNF 412
R H GP+ + FH + SGG+D ++V N+
Sbjct: 46 RFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNY 80
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 308 RVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNF 412
R H GP+ + FH + SGG+D ++V N+
Sbjct: 46 RFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNY 80
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTN--SLELLKEYKTERPVNSA 176
GK++H +K HT I +++ D IT S D TA+++ + S + + PV S
Sbjct: 1012 GKQMHKLKGHTKWIRSIRMVED--TLITGSDDWTARVWSVSRGSCDAVLACHA-GPVQSV 1068
Query: 177 ALSPILDHVVLGGGQDAM 230
SP D ++ G D +
Sbjct: 1069 EYSP-FDKGIITGSADGL 1085
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 12 IHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFD---TNSLELLKEYKTERPVNSAAL 182
I + +H I D+ T+ I+++KD+ K FD T + K ++ V S +
Sbjct: 77 IRTFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISF 136
Query: 183 SPILDHVVLG 212
P + ++ G
Sbjct: 137 HPSGEFLLAG 146
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 42 ITDMQLSRDGTMFITASKDHTAKLFDTNSLELLK 143
I ++ S G+++ITASKD +LFD S + ++
Sbjct: 177 INQVRYSSTGSIYITASKDGAIRLFDGVSAKCVR 210
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +2
Query: 320 HFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE*LICNTLVFH 484
H PIN L FHP S +D ++ +F ++ F ++ ++ FH
Sbjct: 83 HAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISFH 137
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 12 IHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFD---TNSLELLKEYKTERPVNSAAL 182
I + +H I D+ T+ I+++KD+ K FD T + K ++ V S +
Sbjct: 169 IRTFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISF 228
Query: 183 SPILDHVVLG 212
P + ++ G
Sbjct: 229 HPSGEFLLAG 238
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 42 ITDMQLSRDGTMFITASKDHTAKLFDTNSLELLK 143
I ++ S G+++ITASKD +LFD S + ++
Sbjct: 269 INQVRYSSTGSIYITASKDGAIRLFDGVSAKCVR 302
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +2
Query: 320 HFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNRE*LICNTLVFH 484
H PIN L FHP S +D ++ +F ++ F ++ ++ FH
Sbjct: 175 HAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISFH 229
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2
Query: 320 HFGPINSLAFHPDGKSYASGGEDGYVRVHN 409
H G I + F DGK AS GED VRV N
Sbjct: 256 HDGSIVVMKFSHDGKYLASAGEDCVVRVWN 285
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 3 GKKIHSVKEHTHQITDMQLSR---DGTMFITASKDHTAKLFDTNSLELLKEYKTERPVNS 173
GK + S++ H +T ++++R + ++ + D K+FD ++ + P+ S
Sbjct: 254 GKMVCSMESHNKTVTSLRVARMESAESRLVSVALDGYMKVFDYGRAKVTYSMRFPAPLMS 313
Query: 174 AALSPILDHVVLGG 215
LSP V+GG
Sbjct: 314 LGLSPDGSTRVIGG 327
>At2g33720.1 68415.m04133 expressed protein
Length = 326
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -1
Query: 107 SSMILGSSYKHCAVTRK-LHIGDLVGMLFNR 18
SS +L S ++ C V R+ L +GD++GM ++R
Sbjct: 271 SSFVLVSGWRKCFVDRRGLQVGDVIGMYWDR 301
>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
(VPS41) 99.8% identical to Vacuolar assembly protein
VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
similar to vacuolar assembly protein vps41 GI:1835787
from [Lycopersicon esculentum]
Length = 980
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 314 KGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFDYTFDYNR 451
+ H P+N + F +G+ S +DG V +++ FDY+R
Sbjct: 95 RAHTAPVNDINFDTEGEYIGSCSDDGSVVINSLFTDDEKMKFDYHR 140
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 311 VKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
+ GH + ++F PDGK ASG D VR+
Sbjct: 105 IAGHAEAVLCVSFSPDGKQLASGSGDTTVRL 135
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 257 GKFDARFFHLVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYV 397
G R + L E KGH + ++A+ PDGK SG + G +
Sbjct: 129 GDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEI 175
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 308 RVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHN 409
R+ GH +N + F PDGK AS D VR+ N
Sbjct: 355 RLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWN 388
>At5g14050.1 68418.m01644 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to unknown protein (ref|NP_057085.1)
Length = 546
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 293 EEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
+E G +K + G + SLAF DGK S G DG V V
Sbjct: 365 KELIGTLKMN-GSVRSLAFSEDGKHLLSSGGDGQVYV 400
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 293 EEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHN 409
E+ ++KGH I L + D + ASGG D + V N
Sbjct: 282 EDHVSKLKGHKSEICGLKWSSDNRELASGGNDNKLFVWN 320
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 69 GTMFITASK-DHTAKLFDTNSLELLKEYKTERPVNSAALSP 188
G + TAS D + FD +L+K ++ PVN A+LSP
Sbjct: 247 GALHFTASNNDCGVRDFDMERYQLVKHFRFPWPVNHASLSP 287
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 314 KGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
KGH G + S++ G+ ASG DG VR+
Sbjct: 420 KGHTGAVTSISTDSSGEWIASGSTDGSVRM 449
>At2g01470.1 68415.m00070 St12p protein (ST12p) / SEC12p protein,
putative 99.8% identical to St12p protein (GI:166878)
{Arabidopsis thaliana}
Length = 393
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 338 SLAFHPDGKSYASGGEDGYVRV 403
+LAF+P+G A+G EDG +RV
Sbjct: 158 ALAFNPEGSVLAAGAEDGTLRV 179
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 245 INQKGKFDARFFHLVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
+ Q GK L +E ++ H G I S+ F DGK AS GED + +
Sbjct: 390 VRQYGKSSKELTALYKTQE---IQAHNGSIWSIKFSLDGKYLASAGEDCIIHI 439
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +2
Query: 236 DNHINQKGKFDARFFH---LVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRVH 406
+NHI G D + + + G GH + L + GK ASGG D VH
Sbjct: 204 NNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNV--VH 261
Query: 407 NFDQS 421
+D+S
Sbjct: 262 IWDRS 266
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 18 SVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNS 128
+++EHT ITD++ S T+S D T +++D ++
Sbjct: 688 TLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDADN 724
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 311 VKGHFGPINSLAFHPDGKSYASGGED 388
++GH PINS+ + P G AS ED
Sbjct: 814 LQGHANPINSVCWDPSGDFLASVSED 839
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 293 EEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRVH 406
E ++ HFG +N + + + + ASG +D +++H
Sbjct: 49 ERLLATLRDHFGSVNCVRWAKNSRYVASGSDDQVIQIH 86
>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 652
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 455 TPYCNRKCSQSKIDQSYEHEHNHLH-LRKHRTFHLDGKPNC**DQSDLSLGQTPLQTLSG 279
+P+ + + D+ E +H LH L H H PN QSDL+L QTP + +
Sbjct: 83 SPWIKDEGEDNDDDERREKKHKLLHGLNSHSHRH---SPN---SQSDLNLDQTPEPSFNR 136
Query: 278 RN 273
RN
Sbjct: 137 RN 138
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 28.7 bits (61), Expect = 5.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 311 VKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
++GH G + S+AF P + + +G D +++
Sbjct: 172 IQGHLGWVRSVAFDPSNEWFCTGSADRTIKI 202
>At3g01670.1 68416.m00098 expressed protein
Length = 822
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = +2
Query: 266 DARFFHLVFEEEFG--RVKGHFGPINSLAFHPDGKSYASGGE-----DGYVRVHNFDQSY 424
DA H + + G + G FGP AFH +G+ S + D ++ H+ D +
Sbjct: 97 DANIRHSMVPKSLGPNSLGGRFGPGKKQAFHRNGRPMFSLSDDRVMADRVLKTHSPDMIF 156
Query: 425 FDYT 436
FD T
Sbjct: 157 FDVT 160
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 311 VKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
++ H G I S+ F DG+ AS GED +++
Sbjct: 359 IQAHKGSIWSIKFSLDGRYLASAGEDCVIQI 389
>At5g05150.1 68418.m00547 transport protein-related contains 2 WD-40
repeats (PF00400); similar to transport protein Gsa12p
(GI:18307769) [Pichia pastoris]
Length = 374
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +3
Query: 12 IHSVKEHTHQITDMQLSRDGTMFITAS-KDHTAKLFDTNSLELLKEYK--TER-PVNSAA 179
I +K H I M L+ DG++ TAS K ++F+ LL+E++ ER + + A
Sbjct: 197 IKFIKAHDSAIACMTLTLDGSLLATASTKGTLIRIFNAVDGTLLQEFRRGVERAEIYNVA 256
Query: 180 LSPILDHVVLGGGQDAMEV 236
+S L V + + V
Sbjct: 257 ISSNLKWVAASSEKGTLHV 275
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 9 KIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNS 128
K + +H H +T + LS D + + SKD T +D +S
Sbjct: 137 KFRVIVKHQHSVTGVALSDDDSRGFSVSKDGTILHWDVSS 176
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +3
Query: 21 VKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNS---LELLKEYKTERPVNSAALSPI 191
++ H Q+TD+ G +++SKD +++D + ++++ + +E V S P
Sbjct: 144 LRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLETQHCMQIVSGHHSE--VWSVDTDPE 201
Query: 192 LDHVVLGGGQDAMEVTTTSTRRVNSMLVSST 284
+VV G + N LVS +
Sbjct: 202 ERYVVTGSADQELRFYAVKEYSSNGSLVSDS 232
>At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost
identical to subtilisin-like protease AIR3 GI:4218991
from [Arabidopsis thaliana], missing 200 aa at
N-terminus
Length = 772
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 298 GVWPSERSLWSYQQFGFPSRWKVLC 372
GVWP +S PSRWK +C
Sbjct: 155 GVWPESKSFRDEGLGPIPSRWKGIC 179
>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
WD-40 repeats (PF0400);similar to guanine
nucleotide-binding protein beta subunit GPBA (SP:P36408)
[Dictyostelium discoideum (Slime mold)]; similar to
katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
[Homo sapiens]
Length = 418
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 81 ITASKDHTAKLFDTNSLELLKEYKTERPVNSAALSP 188
ITA+ D ++FD S + E+ + VN+ ++SP
Sbjct: 223 ITANNDCKIRVFDAQSFTRVSEFALDWSVNNTSVSP 258
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 296 EEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFD-QSYF 427
E F +KG+ G I L F P+G+ A + VH FD QS F
Sbjct: 324 ESFAVLKGNMGAIRGLKFTPEGRFLAMAEPADF--VHIFDTQSGF 366
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +3
Query: 24 KEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTER 161
+++ +I+ + + T +TAS D + +L+D S LK +++
Sbjct: 30 RDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVASATCLKTINSKK 75
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +3
Query: 24 KEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEYKTER 161
+++ +I+ + + T +TAS D + +L+D S LK +++
Sbjct: 27 RDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVASATCLKTINSKK 72
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 9 KIH-SVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTN 125
K+H S+ H + D+Q S D I+ S D++ ++D N
Sbjct: 44 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVN 83
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 9 KIH-SVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTN 125
K+H S+ H + D+Q S D I+ S D++ ++D N
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVN 142
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 9 KIH-SVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDTN 125
K+H S+ H + D+Q S D I+ S D++ ++D N
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVN 142
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 6 KKIHSVKEHTHQITDMQLSRDGTMFITASKDHTAKLFDT 122
K+IHS++E D ++S+DGT+ I K +FDT
Sbjct: 36 KEIHSLQEFVRNPWDAEVSKDGTVQIHVPK---LAVFDT 71
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 431 SQSKIDQSYEHEHNHLHLRKHRTFH 357
S S+ S++H H+H HL H H
Sbjct: 502 SPSRWQPSHQHHHHHQHLHHHHQNH 526
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 311 VKGHFGPINSLAFHPDGKSYASGGEDGYVRV 403
++GH G + S+AF P + + +G D +++
Sbjct: 166 LQGHLGWVRSVAFDPSNEWFCTGSADRTIKI 196
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 24 KEHTHQITDMQLSRDGTMFITASKDHTAKLFDTNSLELLKEY 149
K H +T + ++F+T SKD KL+D + +L+ +
Sbjct: 2372 KAHLGSVTKIATIPRTSLFLTGSKDGEVKLWDAKAAKLIHHW 2413
>At2g32620.1 68415.m03982 cellulose synthase family protein similar
to Zea mays cellulose synthase-5 [gi:9622882], -4
[gi:9622880], -9 [gi:9622890]
Length = 757
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -2
Query: 184 LRAAEFTGLSVLYSLRSSNELVSNNLAV*SLEAVINIVPSRESCISVIWWVCSLTEW 14
LRA + T L +L+SL L + + L A + ESC S +W + + T+W
Sbjct: 22 LRAVDLTILGLLFSLLLHRILYMSQNGIIWLVAFLC-----ESCFSFVWLLSTCTKW 73
>At1g72850.1 68414.m08426 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 422
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 745 CSENPFNRFRNM*QMWV-NRQIVTNSKNDQFM 653
CSE+P F ++ W+ + I TN K+D F+
Sbjct: 14 CSEDPSKTFVSVLDRWLEQKDITTNFKDDSFL 45
>At1g65030.1 68414.m07371 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to PAK/PLC-interacting protein 1 (GI:14211689)
[Homo sapiens]
Length = 345
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 81 ITASKDHTAKLFDTNSLELLKEYKT-ERPVNSAALSP 188
I+A+ D + +FDT+ LLK ++ ++ VN A+ P
Sbjct: 104 ISAAADGSVAIFDTDPFVLLKSFRPHKKAVNDLAIHP 140
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,459,659
Number of Sequences: 28952
Number of extensions: 356948
Number of successful extensions: 1275
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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