Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120243.Seq
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0819 - 6387000-6387300,6387685-6387843,6387925-6388100,638...    29   3.5  
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906...    29   6.0  
08_02_0841 - 21749599-21749978,21750409-21753367                       28   8.0  
07_01_0245 - 1803170-1803887,1803971-1804641                           28   8.0  

>01_01_0819 -
           6387000-6387300,6387685-6387843,6387925-6388100,
           6389293-6389476,6389565-6389875
          Length = 376

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 224 GRADDDQMQYGCRPSPPCTT 283
           GR D + ++Y  +PSPPC+T
Sbjct: 83  GRPDKEYLKYRWQPSPPCST 102


>11_03_0026 -
           9057965-9058234,9059410-9059522,9059612-9059802,
           9060606-9060720,9061781-9061907,9062915-9062990,
           9064247-9064365,9065430-9065593,9065666-9065779,
           9065966-9066065,9066276-9066340,9068175-9068253,
           9069513-9069659,9069904-9070161,9070657-9070852,
           9071179-9071402,9072531-9072554
          Length = 793

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 760 FGNEHCLWVQIQRVALLCHA 701
           FG++H L VQ+Q  A++CHA
Sbjct: 206 FGSQHNLPVQLQAKAVICHA 225


>08_02_0841 - 21749599-21749978,21750409-21753367
          Length = 1112

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +2

Query: 566  VRF-VAKDIASSLKYVN--CERAIRVHVDGKYKSTFEHADQIQHHAPDSVAKQGDPLYLH 736
            VR+ +A   A  L Y++  C+ AI +H D K  +   + D + H A   +AK  D     
Sbjct: 913  VRYTIALGTAHGLAYLHDDCQPAI-IHRDIKPSNILLNGDMVPHIADFGIAKLMDQSSSA 971

Query: 737  PQTVLITKSAGF 772
            PQT  +  + G+
Sbjct: 972  PQTTGVIGTFGY 983


>07_01_0245 - 1803170-1803887,1803971-1804641
          Length = 462

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -2

Query: 740 VGANTAGRPALPRYLEHGAGFGRHAQTSICTCRRRGHVLP 621
           VG  +   P  PR    GAG G H  TS C C+ R + LP
Sbjct: 11  VGNLSLKMPVAPR--PAGAGAGVHPSTSPCYCKIRLNKLP 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,293,161
Number of Sequences: 37544
Number of extensions: 491446
Number of successful extensions: 1360
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)