Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120243.Seq
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.1  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   8.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   8.0  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 297 LFEQRVVHGGLGLQPYCIWS 238
           +  +++ +GG  LQPY  WS
Sbjct: 96  VISEKIGNGGCLLQPYPDWS 115


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 626 IRVHVDGKYKSTFEHADQIQH 688
           + V+ DG Y + FE ++ I H
Sbjct: 34  LEVNFDGNYINNFETSNGISH 54


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 297 LFEQRVVHGGLGLQPYCIWS 238
           +  +++ +GG  LQPY  WS
Sbjct: 96  VISEKIGNGGRLLQPYPDWS 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,744
Number of Sequences: 438
Number of extensions: 4637
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)