Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120243.Seq
         (834 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28690.1 68417.m04099 expressed protein                             30   1.6  
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative...    30   2.2  
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    30   2.2  
At4g17210.1 68417.m02588 myosin heavy chain-related contains wea...    29   2.9  
At3g10060.1 68416.m01206 immunophilin, putative / FKBP-type pept...    29   2.9  
At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family pr...    28   6.6  
At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr...    28   6.6  

>At4g28690.1 68417.m04099 expressed protein 
          Length = 448

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 244 DAVRLQTEPTVHHTLLEKLMKQELRPYRNSGEVYCTDFEHIKRA 375
           D V L  +PT   T++E      +      GEV C DF H + A
Sbjct: 58  DCVILDFDPTAKETVIETCETDGVLVVGQKGEVACRDFPHPRHA 101


>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
           strong similarity to gi:4467359
          Length = 1116

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/92 (23%), Positives = 42/92 (45%)
 Frame = +2

Query: 437 VESPRVVVNKFNLIN*NGSS*NWRFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNC 616
           +ESPR + +  NLI+ +GS+  W  +F + +F   ++      V ++ K   S ++   C
Sbjct: 15  IESPREITSPSNLISESGSN-GWLIRFFDSSFFCEWI-----AVSYLYKHQHSGVRDYLC 68

Query: 617 ERAIRVHVDGKYKSTFEHADQIQHHAPDSVAK 712
            R   + + G     F+    + H    S+ K
Sbjct: 69  NRMYTLPLSGIESYLFQICYLMVHKPSPSLDK 100


>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -3

Query: 205 SPRQVCSLADLEQIPFGVQQRR-GRIEMALDGSGIKLYRRLGVLEQAQRRRGALGQHVFV 29
           SP + C+  D+ ++   ++     ++ + +DG  +KL+   G+L+  + R G    H   
Sbjct: 173 SPGEGCNCPDMCRLQHLIEDSTLVKVGIGIDGDSVKLFHDYGLLKPNRIRLGNWEVHPLS 232

Query: 28  KPILQSAA 5
           K  LQ AA
Sbjct: 233 KQQLQYAA 240


>At4g17210.1 68417.m02588 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P14105 myosin heavy chain,
           nonmuscle (Cellular myosin heavy chain) (NMMHC) [Gallus
           gallus]
          Length = 527

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 214 SSQSPRQVCSLADLEQIPFGVQQRRGRIEMALDGSGIKLYRRLGVLEQAQRRRGAL 47
           SSQS      ++D E      +Q   R+++ LDGS     + L  L+ AQR+   L
Sbjct: 59  SSQSQDTTTDVSDKEMQLLLAEQEMDRVKICLDGSVAAKAQALSDLDSAQRKAADL 114


>At3g10060.1 68416.m01206 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative
           Pfam:PF-254: FKBP-type peptidyl-prolyl cis-trans
           isomerases
          Length = 230

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 99  SLIPLPSRAISMRPRRCCTPKGICSRSARLQT 194
           S IP PSR    +P RC  P   C +  R +T
Sbjct: 17  SSIPFPSRKRQSKPYRCSLPSPGCEKVIRTET 48


>At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 485

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 85  PSDGKV*FRSRRGPFLCGHDAAVR-RKEFVQDRPDYKLDAATGYSELXXXXXXXDAV 252
           P DG +  R+RRG     H  A R R+E + +R  +  D   G +++       D +
Sbjct: 295 PKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEI 351


>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 486

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 85  PSDGKV*FRSRRGPFLCGHDAAVR-RKEFVQDRPDYKLDAATGYSELXXXXXXXDAV 252
           P DG +  R+RRG     H  A R R+E + +R  +  D   G +++       D +
Sbjct: 296 PKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEI 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,822,290
Number of Sequences: 28952
Number of extensions: 353965
Number of successful extensions: 847
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)