Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120242.Seq
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.66 
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    24   1.2  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    24   1.2  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   3.5  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 164 CVQFLGGIVVVYLF*SGVEKVLQLPIIETLL 72
           CV FLG I++ ++F   +  ++ + I +TL+
Sbjct: 235 CVFFLGSILIFFIFPLAILIIVYILIAKTLM 265


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 184 DCLTRSEIQALFREAINTLKHTMKQKTSARTCWT 285
           D +TRS +  L +  + TLK T+        CWT
Sbjct: 256 DSVTRSSLAFLGKAKVRTLKMTIIIVLVFFVCWT 289


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 184 DCLTRSEIQALFREAINTLKHTMKQKTSARTCWT 285
           D +TRS +  L +  + TLK T+        CWT
Sbjct: 256 DSVTRSSLAFLGKAKVRTLKMTIIIVLVFFVCWT 289


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 381 HHKRIARLLGIKKIYHQEYKR 443
           H    A+L  I++IYHQE ++
Sbjct: 144 HSDYRAKLAQIRQIYHQELEK 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,439
Number of Sequences: 336
Number of extensions: 4121
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)