Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120242.Seq
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    33   0.044
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   2.2  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    27   3.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.9  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    27   3.9  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   6.7  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   8.9  

>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
 Frame = +1

Query: 526 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK---KNTNYILNVMPVMQDERKMSKRKEKVI 696
           N+++  +L+  +  + N+D L+A VNFL K    N   ++ V   M +    +KR ++++
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQQLL 202

Query: 697 NNN 705
           ++N
Sbjct: 203 DHN 205


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +1

Query: 505 RTAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNTNYIL 636
           R+ A+C+   +L   ES+ +NK   ++L++I+     K+ N ++
Sbjct: 91  RSGAICEAIYVLQNFESTDFNKEK-ERLVSIILESNNKSNNELI 133


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 218 NSACISLRVKQSELHPPKCVQFLGGIVVVYL--F*SGVEKVLQ 96
           N       +  S L  PKC   +G  VVVYL  F S +EK+ Q
Sbjct: 59  NGVTYDFHILPSGLVNPKCQNLIGSGVVVYLPAFFSELEKLEQ 101


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +1

Query: 646  PVMQDERKMSKRKEKVINNNKYILFNSWYTK 738
            P++ + +K+S +  K++ +N Y   N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/68 (17%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +1

Query: 529 EKLLNKLESSSYN-KSNMDQLIAIVNFLEK--KNTNYILNVMPVMQDERKMSKRKEKVIN 699
           E  +   +S S++ +    +++A++N  ++  ++ N++ +   +  ++ K +  K +V+ 
Sbjct: 421 EDEVTNFDSRSFSLRLRRSEIVALINTFDRLSRSINFVDDFKQIYSEQHKPASFKRRVLR 480

Query: 700 NNKYILFN 723
             K +LF+
Sbjct: 481 RIKQLLFS 488


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -2

Query: 708 FIVVNHLLLAFGHFAFVLHDRHYVEDIVSVLFFQEIYNSN*LVHVGFVVRARFQFIQQLF 529
           FI+    LL F  F       H V  +  V FFQ ++ S  L + G  +   F  +Q+ +
Sbjct: 172 FIIYFVTLLIFTIFQVGGGCAHNVWTLAIVRFFQGVFGSTPLANAGGTISDLFTPVQRTY 231

Query: 528 I 526
           +
Sbjct: 232 V 232


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -3

Query: 476  PCLIFVNL*NDPLVFLMIYFFNAQQPGNSFVMKTHLTLRTFVGNYCEM 333
            P LI ++L    L   +I+FF+   P N+F M+T LT  T + N  E+
Sbjct: 993  PALIQLSLDGFRLAMNVIFFFSMDLPRNAF-MQT-LTKFTHLNNTSEL 1038


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 657 LHDRHYVEDIVSVLFF 610
           L+DR YVE I+ +LFF
Sbjct: 253 LYDRVYVEKILDILFF 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,672
Number of Sequences: 5004
Number of extensions: 65874
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)