Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120242.Seq
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0557 + 4103721-4104616,4105428-4105626 31 0.76
03_05_0625 - 26225201-26225879,26226706-26227553 29 3.1
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 29 5.3
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 29 5.3
05_07_0350 - 29457444-29457871,29458786-29461456 28 7.1
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 28 9.3
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206 28 9.3
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280... 28 9.3
03_05_0092 - 20714102-20717902 28 9.3
>02_01_0557 + 4103721-4104616,4105428-4105626
Length = 364
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -3
Query: 200 LRVKQSELHPPKCVQFLGGIVVVYLF*SGVEKVLQLPIIETLLEXAHKTKKFNVIAVIV 24
LR++ PK ++FLG +V+ YL + + L + + L+ AHK K I +IV
Sbjct: 82 LRMENGGHVEPKTIKFLGFVVMGYLLITNLGGSLLIYLYLNLVPSAHKILKRKGIGIIV 140
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 219 EQRLYFASGQAVRITPA*VRAIFGGHRC 136
E+R + G+A R T A +R F GH+C
Sbjct: 236 EERTFHRQGEAARTTIADMRMDFSGHKC 263
>12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 204 NTSAVQGSHQHAQAHNETEDVCAHMLDIVSFERIKEYIRANLGHFTVITDKCSKRKVCLH 383
+T + +G + QA + +V + + I S + + +RA L T++ + CS V LH
Sbjct: 1378 DTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLH 1437
Query: 384 H 386
+
Sbjct: 1438 Y 1438
>11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 204 NTSAVQGSHQHAQAHNETEDVCAHMLDIVSFERIKEYIRANLGHFTVITDKCSKRKVCLH 383
+T + +G + QA + +V + + I S + + +RA L T++ + CS V LH
Sbjct: 827 DTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLH 886
Query: 384 H 386
+
Sbjct: 887 Y 887
>05_07_0350 - 29457444-29457871,29458786-29461456
Length = 1032
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 195 PKRNTSAVQGSHQHAQAHNETEDVCAHM-LDIVSFERIKEYIRANLGHFT 341
P T +QG++ Q HNE ED + + L +S R+ + A++G+F+
Sbjct: 447 PALTTLELQGNYLTGQLHNEDEDAGSPLSLLNLSGNRLNGSLPASIGNFS 496
>07_03_0603 - 19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = -3
Query: 362 RTFVGNYCEMA*ISSYIFFYTLKRHDVQHVRADVFCFI--VCLSVLMASLNS-ACISLRV 192
+T V N + I SY+ Y L++ Q + D+ C I + +V S+++ I +
Sbjct: 835 QTAVRNKKRITIIQSYVKAYLLRKRSKQEITDDIMCLINRLIAAVSQRSISTIRQICATL 894
Query: 191 KQSELHPPKCVQ 156
+ H KC Q
Sbjct: 895 STATEHSEKCCQ 906
>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
Length = 961
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 370 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 498
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 803 KTAFITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845
>06_01_0390 +
2802334-2802339,2802461-2802618,2802755-2802826,
2802967-2803114,2803234-2803503,2803741-2803904,
2804184-2804236,2804302-2804496,2804597-2804694,
2804787-2804891
Length = 422
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = +3
Query: 150 QKLHALRRV*FGLLDPKRNTS-----AVQGSH-QHAQAHNETEDVCAHMLDIVSFERIKE 311
+ +H L+RV + +D +T+ A H ++ HN V AH+ D + + ++
Sbjct: 357 EMIHGLQRVGWKKVDVNFHTALWPYFAHNNIHVKNEWLHNAGAGVIAHVADSIKQQESRK 416
Query: 312 YIRANL 329
Y RANL
Sbjct: 417 YFRANL 422
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = -2
Query: 756 PLGLLDLSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVSVLFFQEIYNSN 589
PL + L++ T N+ ++N L L H + D+H+++ I +++FF + NS+
Sbjct: 582 PLEVRHLTIMT--NNLSKLINDLSLKISHSSG--SDQHFLQRIRTIIFFADFSNSD 633
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,916,571
Number of Sequences: 37544
Number of extensions: 399760
Number of successful extensions: 940
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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