Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120242.Seq
(763 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28) 32 0.58
SB_42343| Best HMM Match : DUF433 (HMM E-Value=0.96) 31 1.0
SB_7627| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 31 1.4
SB_22635| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_31237| Best HMM Match : Cathelicidins (HMM E-Value=0.58) 30 1.8
SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40) 29 4.1
SB_33067| Best HMM Match : DUF1117 (HMM E-Value=0.4) 29 5.5
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065) 28 7.2
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 28 7.2
>SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)
Length = 580
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -3
Query: 263 VFCFIVCLSVLMASLNSACISLRVKQSELHPPKCVQFLGGIVVVYLF 123
+FC L+ L A +++ C+ ++ + PP +L G+ +++LF
Sbjct: 288 LFCLYFDLTPLPADIDTVCLYVQFLSRSIAPPSIRNYLNGVKLLHLF 334
>SB_42343| Best HMM Match : DUF433 (HMM E-Value=0.96)
Length = 153
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 288 VSFERIKEYIRANLGHFTVITDKCSKRKVCLHHKRIARLLGIKKIYHQEYKRV 446
+S ER+KEY++A + T K SK + CL H L + I H+ KR+
Sbjct: 12 LSEERMKEYMKA------LKTKKFSKLEFCLRHPYTRSSLTVSAINHRPLKRI 58
>SB_7627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 288 VSFERIKEYIRANLGHFTVITDKCSKRKVCLHHKRIARLLGIKKIYHQEYKRV 446
+S ER+KEY++A + T K SK + CL H L + I H+ KR+
Sbjct: 12 LSEERMKEYMKA------LKTKKFSKLEFCLRHPYTRSSLTVSAINHRPLKRI 58
>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 139
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 643 MPVMQDERKMSKRKEKVINNNKYILFNSWYTKIK 744
+PV +++ + K NN KY L WY+K++
Sbjct: 7 LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40
>SB_22635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -2
Query: 585 LVHVGFVVRARFQFIQQLFIFAHGRSSV---EDCCSGMFTMFDFCK 457
L V ++RA+ Q+I+ LF+FA +V E CCSG +FCK
Sbjct: 121 LAPVRMILRAKRQYIRLLFLFAFNVLNVKYCEICCSGS----NFCK 162
>SB_31237| Best HMM Match : Cathelicidins (HMM E-Value=0.58)
Length = 562
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = +1
Query: 469 KHGKHAGATIFYRTAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNTNYILNVMP 648
K A AT+ +A K + + L+ ++ ++ + EK N+N ILN +P
Sbjct: 203 KSQNDAPATLMSNSAV--KKTAIFSSLDDFLVLRTTKTPQASVRSTYEKDNSNTILNTLP 260
Query: 649 VMQDERK 669
+ Q+++K
Sbjct: 261 IKQEQKK 267
>SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)
Length = 595
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Frame = +1
Query: 469 KHG--KHAGATIFYRTAAVCKN--EKLLNK---LESSSYNKSNMDQLIAIVNFLEKKNTN 627
+HG K +G T+FY A + K K +ESS++ +S D L+A ++ +KK+ N
Sbjct: 346 QHGELKGSGETVFYSPRAHASDTPSKKPTKNLTMESSTFKESEKDVLMASLDIKDKKHVN 405
Query: 628 YIL 636
++
Sbjct: 406 TLV 408
>SB_33067| Best HMM Match : DUF1117 (HMM E-Value=0.4)
Length = 297
Score = 28.7 bits (61), Expect = 5.5
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +3
Query: 132 DNNDAPQKLHALRRV*FG-LLDPKRNTSAVQGSHQHAQAHNETEDVCAHMLDIVSFERIK 308
D+ +A Q+ H +R G D R S + H + NETE + I S E
Sbjct: 107 DSGNA-QESHKQKRKSSGETSDRLRTHSTDRKRTNHGSSLNETEKRLSKGSSIESHEPDT 165
Query: 309 EYIRANLGHFTVITDKCSKRKVCLH-HKRIAR 401
+ GH VI KC +K CLH H R R
Sbjct: 166 QG-----GHLEVIKTKCFYKKRCLHKHVRTKR 192
>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
Length = 557
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 704 INTFCLTVGTLRSSSPSGPR 763
++TF LT+ +L + SP+GPR
Sbjct: 232 VDTFTLTLSSLNAESPTGPR 251
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 704 INTFCLTVGTLRSSSPSGPR 763
++TF LT+ +L + SP+GPR
Sbjct: 392 VDTFTLTLSSLNAESPTGPR 411
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,961,139
Number of Sequences: 59808
Number of extensions: 511988
Number of successful extensions: 1295
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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