Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120242.Seq
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-1|AAQ91906.1|  449|Caenorhabditis elegans Hypothetical ...    30   1.6  
AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z95123-1|CAD59158.1|   83|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>AF068709-1|AAQ91906.1|  449|Caenorhabditis elegans Hypothetical
           protein C24B9.3b protein.
          Length = 449

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/81 (25%), Positives = 36/81 (44%)
 Frame = +3

Query: 102 DFFYATLKKIDNNDAPQKLHALRRV*FGLLDPKRNTSAVQGSHQHAQAHNETEDVCAHML 281
           +F    L    N D    LHA R   F    P +N S++  SH + ++        ++  
Sbjct: 7   NFISKNLNYPPNGDCFYWLHASRAQQFPNYTPLKNLSSLISSHSNVESDIVIVVDASNAY 66

Query: 282 DIVSFERIKEYIRANLGHFTV 344
           D V+FE+I+ ++   +   TV
Sbjct: 67  DQVTFEQIRTFLLNFVSSLTV 87


>AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical
           protein Y104H12D.2 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 511 AAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNTNY 630
           AA  KNE LL+ L+  SYN++   Q++ I     K N NY
Sbjct: 34  AARTKNETLLSLLDKFSYNET--VQMVVIKQIGRKNNCNY 71


>Z95123-1|CAD59158.1|   83|Caenorhabditis elegans Hypothetical
           protein VZK822L.2 protein.
          Length = 83

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 236 VLMASLNSACISLRVKQSELHPPKCVQFLGGIVVVYL 126
           +L+  ++  CI + + QS L PP+C     G +++ L
Sbjct: 13  LLVGGMSIVCILIHIIQSTLRPPQCCHNSSGTLIIGL 49


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 756 PLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 640
           PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 75  PLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,863,774
Number of Sequences: 27780
Number of extensions: 385921
Number of successful extensions: 1115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)