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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120242.Seq
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54500.1 68414.m06216 rubredoxin family protein similar to SP...    29   3.4  
At1g14570.2 68414.m01733 UBX domain-containing protein contains ...    29   3.4  
At1g14570.1 68414.m01732 UBX domain-containing protein contains ...    29   3.4  
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ...    29   4.5  
At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p...    28   5.9  
At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p...    28   5.9  
At1g49350.1 68414.m05532 pfkB-type carbohydrate kinase family pr...    28   7.8  

>At1g54500.1 68414.m06216 rubredoxin family protein similar to
           SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas};
           contains Pfam profile PF00301: Rubredoxin
          Length = 195

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 288 RCPTCARRRLLFHCVLERVDGFPEQRLYFASGQAV 184
           RCPTC   +  F   +  + GF + + Y   G A+
Sbjct: 134 RCPTCGAAQSFFESKMVEIAGFAQNQQYGLGGNAL 168


>At1g14570.2 68414.m01733 UBX domain-containing protein contains
           Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
           interaction motif
          Length = 468

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 183 GLLDPKRNTSAVQGSHQHAQAHNETEDVCAHML--DIVSFERIKEYIRANLGHFTVITDK 356
           G  +  + TS+ Q         + TE   +HML  D  + + + + I+AN   + V  D 
Sbjct: 185 GSFEQAKTTSSSQDKWLLVNLQSTTE-FSSHMLNRDTWANDAVSQTIKANFIFWQVYDDT 243

Query: 357 CSKRKVCLHHK 389
              RKVC ++K
Sbjct: 244 TEGRKVCTYYK 254


>At1g14570.1 68414.m01732 UBX domain-containing protein contains
           Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
           interaction motif
          Length = 468

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 183 GLLDPKRNTSAVQGSHQHAQAHNETEDVCAHML--DIVSFERIKEYIRANLGHFTVITDK 356
           G  +  + TS+ Q         + TE   +HML  D  + + + + I+AN   + V  D 
Sbjct: 185 GSFEQAKTTSSSQDKWLLVNLQSTTE-FSSHMLNRDTWANDAVSQTIKANFIFWQVYDDT 243

Query: 357 CSKRKVCLHHK 389
              RKVC ++K
Sbjct: 244 TEGRKVCTYYK 254


>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
           putative similar to PIF3 like basic Helix Loop Helix
           protein (PIL1) [Arabidopsis thaliana] GI:22535492;
           contains Myc-type, 'helix-loop-helix' dimerization
           domain signature, PROSITE:PS00038
          Length = 416

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
 Frame = +1

Query: 517 VCKNEKLLNKLE----SSSYNKSNMDQLIAI--VNFLE--KKNTNYI--LNVMPVMQDER 666
           VC+N ++L K+     + S+ K     L+ +    + E  KKN   +    V+PV Q + 
Sbjct: 35  VCENGQILAKIRRPKNNGSFQKQRRQSLLDLYETEYSEGFKKNIKILGDTQVVPVSQSKP 94

Query: 667 KMSKRKEKVINNNKYILFNS 726
           +  K   + +NNNK  L +S
Sbjct: 95  QQDKETNEQMNNNKKKLKSS 114


>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 301

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 501 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 373
           E CCSG F   D CKP +      +     CP A+ +  D+ T
Sbjct: 196 EYCCSGAFGTPDTCKPSEYSQFFKNA----CPRAYSYAYDDGT 234


>At2g17860.1 68415.m02069 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 253

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 501 EDCCSGMFTMFDFCKPLKRPACILDDIFF--*CPTAWQFVCDEDT 373
           E CC+G F   D C+P +        +FF   CPTA+ +  D+ T
Sbjct: 195 EFCCNGAFGTPDTCQPSEY------SVFFKKTCPTAYSYAYDDGT 233


>At1g49350.1 68414.m05532 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 378

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +1

Query: 469 KHGKHAGATIFYRTAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNTNYILNVMP 648
           K    +   +++   +V K++++ +  +  +    N D+LIA+ N L  KN  +     P
Sbjct: 148 KLAAESSVPVWFEPVSVTKSQRIASIAKYVTIVSPNQDELIAMANALCAKNLFH-----P 202

Query: 649 VMQDERKMS 675
              DE K+S
Sbjct: 203 FRSDENKLS 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,330,445
Number of Sequences: 28952
Number of extensions: 335450
Number of successful extensions: 827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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