BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120242.Seq (763 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g54500.1 68414.m06216 rubredoxin family protein similar to SP... 29 3.4 At1g14570.2 68414.m01733 UBX domain-containing protein contains ... 29 3.4 At1g14570.1 68414.m01732 UBX domain-containing protein contains ... 29 3.4 At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ... 29 4.5 At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p... 28 5.9 At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p... 28 5.9 At1g49350.1 68414.m05532 pfkB-type carbohydrate kinase family pr... 28 7.8 >At1g54500.1 68414.m06216 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin Length = 195 Score = 29.1 bits (62), Expect = 3.4 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = -2 Query: 288 RCPTCARRRLLFHCVLERVDGFPEQRLYFASGQAV 184 RCPTC + F + + GF + + Y G A+ Sbjct: 134 RCPTCGAAQSFFESKMVEIAGFAQNQQYGLGGNAL 168 >At1g14570.2 68414.m01733 UBX domain-containing protein contains Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin interaction motif Length = 468 Score = 29.1 bits (62), Expect = 3.4 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +3 Query: 183 GLLDPKRNTSAVQGSHQHAQAHNETEDVCAHML--DIVSFERIKEYIRANLGHFTVITDK 356 G + + TS+ Q + TE +HML D + + + + I+AN + V D Sbjct: 185 GSFEQAKTTSSSQDKWLLVNLQSTTE-FSSHMLNRDTWANDAVSQTIKANFIFWQVYDDT 243 Query: 357 CSKRKVCLHHK 389 RKVC ++K Sbjct: 244 TEGRKVCTYYK 254 >At1g14570.1 68414.m01732 UBX domain-containing protein contains Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin interaction motif Length = 468 Score = 29.1 bits (62), Expect = 3.4 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +3 Query: 183 GLLDPKRNTSAVQGSHQHAQAHNETEDVCAHML--DIVSFERIKEYIRANLGHFTVITDK 356 G + + TS+ Q + TE +HML D + + + + I+AN + V D Sbjct: 185 GSFEQAKTTSSSQDKWLLVNLQSTTE-FSSHMLNRDTWANDAVSQTIKANFIFWQVYDDT 243 Query: 357 CSKRKVCLHHK 389 RKVC ++K Sbjct: 244 TEGRKVCTYYK 254 >At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, putative similar to PIF3 like basic Helix Loop Helix protein (PIL1) [Arabidopsis thaliana] GI:22535492; contains Myc-type, 'helix-loop-helix' dimerization domain signature, PROSITE:PS00038 Length = 416 Score = 28.7 bits (61), Expect = 4.5 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 10/80 (12%) Frame = +1 Query: 517 VCKNEKLLNKLE----SSSYNKSNMDQLIAI--VNFLE--KKNTNYI--LNVMPVMQDER 666 VC+N ++L K+ + S+ K L+ + + E KKN + V+PV Q + Sbjct: 35 VCENGQILAKIRRPKNNGSFQKQRRQSLLDLYETEYSEGFKKNIKILGDTQVVPVSQSKP 94 Query: 667 KMSKRKEKVINNNKYILFNS 726 + K + +NNNK L +S Sbjct: 95 QQDKETNEQMNNNKKKLKSS 114 >At4g36010.1 68417.m05127 pathogenesis-related thaumatin family protein similar to receptor serine/threonine kinase PR5K [Arabidopsis thaliana] GI:1235680; contains Pfam profile PF00314: Thaumatin family Length = 301 Score = 28.3 bits (60), Expect = 5.9 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -2 Query: 501 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 373 E CCSG F D CKP + + CP A+ + D+ T Sbjct: 196 EYCCSGAFGTPDTCKPSEYSQFFKNA----CPRAYSYAYDDGT 234 >At2g17860.1 68415.m02069 pathogenesis-related thaumatin family protein similar to receptor serine/threonine kinase PR5K [Arabidopsis thaliana] GI:1235680; contains Pfam profile PF00314: Thaumatin family Length = 253 Score = 28.3 bits (60), Expect = 5.9 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = -2 Query: 501 EDCCSGMFTMFDFCKPLKRPACILDDIFF--*CPTAWQFVCDEDT 373 E CC+G F D C+P + +FF CPTA+ + D+ T Sbjct: 195 EFCCNGAFGTPDTCQPSEY------SVFFKKTCPTAYSYAYDDGT 233 >At1g49350.1 68414.m05532 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase Length = 378 Score = 27.9 bits (59), Expect = 7.8 Identities = 17/69 (24%), Positives = 33/69 (47%) Frame = +1 Query: 469 KHGKHAGATIFYRTAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNTNYILNVMP 648 K + +++ +V K++++ + + + N D+LIA+ N L KN + P Sbjct: 148 KLAAESSVPVWFEPVSVTKSQRIASIAKYVTIVSPNQDELIAMANALCAKNLFH-----P 202 Query: 649 VMQDERKMS 675 DE K+S Sbjct: 203 FRSDENKLS 211 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,330,445 Number of Sequences: 28952 Number of extensions: 335450 Number of successful extensions: 827 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 810 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 827 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1702303248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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