Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120241.Seq
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       44   1e-06
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    23   3.3  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   4.4  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    22   5.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.7  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 23/91 (25%), Positives = 43/91 (47%)
 Frame = +2

Query: 5   GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRVS 184
           G  ++ + +K +YYW  +   ++  +++C LCQ+ K+  R ++ P+            V 
Sbjct: 144 GATKVYNSMKREYYWPNMYRTIKKRLRSCDLCQKTKSSNRPHQGPL-TPILYDHIGDLVC 202

Query: 185 LDIVGPLPESGTAKLXYVMTLQDALLNIQQL 277
           +D  GPLP +G     YV  + D      +L
Sbjct: 203 VDFYGPLP-TGRLGASYVFVVIDVFSKFLKL 232



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +1

Query: 259 TKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKNLW 438
           +K+   YPLR  +A+     LI   S +  P  + +D GT F S+ ++++     I+   
Sbjct: 227 SKFLKLYPLRKATAKIAAKRLIEDFSGYIKPKCVLSDHGTQFISNTWQNSLRAADIQPTL 286

Query: 439 STPYHPQS 462
           S+  HP+S
Sbjct: 287 SSIRHPES 294



 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +3

Query: 429 KPLVDAIPSPISRSFREKPFHTQRVPKSFVNDNQDDWPRYVYTAMLSYNTAIHSTTNFSP 608
           +P + +I  P S           R+ +++  +N   W  ++       N   H +T FSP
Sbjct: 283 QPTLSSIRHPESNPSERVMRELGRIFRAYCRENHASWVNHLSNIEDCLNYVPHISTGFSP 342

Query: 609 YELLFG 626
           YE+L+G
Sbjct: 343 YEILYG 348


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 420 ENKKPLVDAIPSPISRSFREKPFHTQRVPKSFVNDNQDDW 539
           E KK L DA+ S  S+   EK     R    ++ DN+ DW
Sbjct: 62  ELKKALPDALHSGCSKC-TEKQKEGSRKIIHYLIDNKRDW 100


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 198 PTISSETLWKGLVEVVVICIGARLH 124
           P +S  TLWK  + +  +C+  RL+
Sbjct: 3   PLLSLVTLWKLTIFLSSMCLDPRLN 27


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 420 ENKKPLVDAIPSPISRSFREKPFHTQRVPKSFVNDNQDDWPR 545
           E KK L DA+ S  ++  +++    ++V +        DW R
Sbjct: 61  ELKKTLPDALSSGCTKCNQKQKETAEKVIRHLTQKRARDWER 102


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 451 HPQSQGALERSHSTLKEYLNH 513
           +PQ Q    ++H   + Y+NH
Sbjct: 354 NPQQQYYYNKNHPNSENYINH 374


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 451 HPQSQGALERSHSTLKEYLNH 513
           +PQ Q    ++H   + Y+NH
Sbjct: 302 NPQQQYYYNKNHPNSENYINH 322


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 429 KPLVDAIPSPISRSFREKPFH 491
           KPLVDA    + RS+ ++  H
Sbjct: 778 KPLVDAQTMNLLRSYHQQQSH 798


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,295
Number of Sequences: 336
Number of extensions: 4092
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)