BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120241.Seq (725 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 75 7e-14 AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 75 7e-14 AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p pro... 75 7e-14 S68526-1|AAD14015.2| 624|Drosophila melanogaster pol polyprotei... 72 9e-13 AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p pro... 71 2e-12 AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein ... 71 2e-12 AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed... 71 2e-12 AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 65 8e-11 AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 63 3e-10 AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 52 8e-07 AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p pro... 47 3e-05 Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia poly... 45 9e-05 AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p pro... 45 1e-04 AE014135-102|AAF59331.1| 131|Drosophila melanogaster CG11260-PA... 42 6e-04 X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 42 0.001 M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 42 0.001 EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 42 0.001 EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 42 0.001 DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 42 0.001 DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 42 0.001 AJ279888-1|CAB69645.1| 120|Drosophila melanogaster integrase pr... 42 0.001 AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 42 0.001 X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 41 0.002 AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 40 0.003 AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein. 40 0.003 U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 38 0.011 X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr... 37 0.024 AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed... 36 0.056 AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 36 0.074 AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 34 0.23 AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 31 2.1 X15707-1|CAA33737.1| 267|Drosophila melanogaster protein ( Dros... 30 3.7 X07656-2|CAA30503.1| 982|Drosophila melanogaster protein ( Dros... 29 6.4 AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 29 8.5 AY058502-1|AAL13731.1| 280|Drosophila melanogaster LD21171p pro... 29 8.5 AJ010298-1|CAA09069.1| 1571|Drosophila melanogaster polyprotein ... 29 8.5 >X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Drosophila retrotransposon412 genome. ). Length = 1237 Score = 75.4 bits (177), Expect = 7e-14 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Frame = +1 Query: 256 LTKYSAAYPLRSVSAEETTDCLIH-FISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432 LTKY A P+ + SA+ + FI +G T TD GT + + + C +LKIKN Sbjct: 993 LTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKN 1052 Query: 433 LWSTPYHPQSQGALERSHSTLKEYLNHL*TTIKMTGPDMFTQ 558 + ST +H Q+ G +ERSH TL EY+ +T K T D++ Q Sbjct: 1053 ITSTAHHHQTVGVVERSHRTLNEYIRSYISTDK-TDWDVWLQ 1093 Score = 64.9 bits (151), Expect = 1e-10 Identities = 29/81 (35%), Positives = 45/81 (55%) Frame = +2 Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRVS 184 G + L+++K YYWK + ++ Y++ C CQ+ K + + PM IT T F RV Sbjct: 911 GITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKH-TKTPMTITETPEHAFDRVV 969 Query: 185 LDIVGPLPESGTAKLXYVMTL 247 +D +GPLP+S Y +TL Sbjct: 970 VDTIGPLPKSENGN-EYAVTL 989 Score = 39.5 bits (88), Expect = 0.005 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Frame = +3 Query: 507 KSFVNDNQDDWPRYVYTAMLSYNTAIHSTTNFSPYELLFGHKAFIPDSIYK----QDLTT 674 +S+++ ++ DW ++ + +NT N+ PYEL+FG + +P K + + Sbjct: 1078 RSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLHSIEPIYN 1137 Query: 675 YPDYVRMLQHRLKQSW 722 DY + ++RL+ ++ Sbjct: 1138 IDDYAKESKYRLEVAY 1153 >AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent DNA polymerase protein. Length = 1000 Score = 75.4 bits (177), Expect = 7e-14 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Frame = +1 Query: 256 LTKYSAAYPLRSVSAEETTDCLIH-FISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432 LTKY A P+ + SA+ + FI +G T TD GT + + + C +LKIKN Sbjct: 756 LTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKN 815 Query: 433 LWSTPYHPQSQGALERSHSTLKEYLNHL*TTIKMTGPDMFTQ 558 + ST +H Q+ G +ERSH TL EY+ +T K T D++ Q Sbjct: 816 ITSTAHHHQTVGVVERSHRTLNEYIRSYISTDK-TDWDVWLQ 856 Score = 64.9 bits (151), Expect = 1e-10 Identities = 29/81 (35%), Positives = 45/81 (55%) Frame = +2 Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRVS 184 G + L+++K YYWK + ++ Y++ C CQ+ K + + PM IT T F RV Sbjct: 674 GITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKH-TKTPMTITETPEHAFDRVV 732 Query: 185 LDIVGPLPESGTAKLXYVMTL 247 +D +GPLP+S Y +TL Sbjct: 733 VDTIGPLPKSENGN-EYAVTL 752 Score = 39.5 bits (88), Expect = 0.005 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Frame = +3 Query: 507 KSFVNDNQDDWPRYVYTAMLSYNTAIHSTTNFSPYELLFGHKAFIPDSIYK----QDLTT 674 +S+++ ++ DW ++ + +NT N+ PYEL+FG + +P K + + Sbjct: 841 RSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLHSIEPIYN 900 Query: 675 YPDYVRMLQHRLKQSW 722 DY + ++RL+ ++ Sbjct: 901 IDDYAKESKYRLEVAY 916 >AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p protein. Length = 320 Score = 75.4 bits (177), Expect = 7e-14 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Frame = +1 Query: 256 LTKYSAAYPLRSVSAEETTDCLIH-FISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432 LTKY A P+ + SA+ + FI +G T TD GT + + + C +LKIKN Sbjct: 144 LTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKN 203 Query: 433 LWSTPYHPQSQGALERSHSTLKEYLNHL*TTIKMTGPDMFTQ 558 + ST +H Q+ G +ERSH TL EY+ +T K T D++ Q Sbjct: 204 ITSTAHHHQTVGVVERSHRTLNEYIRSYISTDK-TDWDVWLQ 244 Score = 64.9 bits (151), Expect = 1e-10 Identities = 29/81 (35%), Positives = 45/81 (55%) Frame = +2 Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRVS 184 G + L+++K YYWK + ++ Y++ C CQ+ K + + PM IT T F RV Sbjct: 62 GITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKH-TKTPMTITETPEHAFDRVV 120 Query: 185 LDIVGPLPESGTAKLXYVMTL 247 +D +GPLP+S Y +TL Sbjct: 121 VDTIGPLPKSENGN-EYAVTL 140 Score = 39.5 bits (88), Expect = 0.005 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Frame = +3 Query: 507 KSFVNDNQDDWPRYVYTAMLSYNTAIHSTTNFSPYELLFGHKAFIPDSIYK----QDLTT 674 +S+++ ++ DW ++ + +NT N+ PYEL+FG + +P K + + Sbjct: 229 RSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLHSIEPIYN 288 Query: 675 YPDYVRMLQHRLKQSW 722 DY + ++RL+ ++ Sbjct: 289 IDDYAKESKYRLEVAY 304 >S68526-1|AAD14015.2| 624|Drosophila melanogaster pol polyprotein protein. Length = 624 Score = 71.7 bits (168), Expect = 9e-13 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Frame = +1 Query: 256 LTKYSAAYPLRSVSAEETTDCLI-HFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432 LTKY P+ + SA+ + +FI +G TI TD GT + + + C ++KIKN Sbjct: 380 LTKYLVTVPIPNKSAKSVAKAVFENFILKYGPMKTIITDMGTEYKNQIIDDLCKYMKIKN 439 Query: 433 LWSTPYHPQSQGALERSHSTLKEYL 507 + ST +H Q+ G +ERSH T EY+ Sbjct: 440 ITSTAHHHQTLGTIERSHRTFNEYV 464 Score = 30.7 bits (66), Expect = 2.1 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = +3 Query: 507 KSFVNDNQDDWPRYVYTAMLSYNTAIHSTTNFSPYELLFG 626 +S+++ ++ DW ++ +NT ++ PYEL+FG Sbjct: 465 RSYISVDKTDWDIWIQYFTYCFNTTPSVVHDYCPYELVFG 504 >AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p protein. Length = 370 Score = 70.5 bits (165), Expect = 2e-12 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Frame = +1 Query: 256 LTKYSAAYPLRSVSAEETTDCLI-HFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432 LTKY P+ + SA + +FI +G T +D GT + +++ + C ++KI+N Sbjct: 126 LTKYLVTIPVANKSANTVAKAIFENFILKYGPMKTFISDMGTEYKNNVIQDMCKYMKIEN 185 Query: 433 LWSTPYHPQSQGALERSHSTLKEYL 507 L ST YH Q+ G +ERSH T EY+ Sbjct: 186 LTSTAYHHQTLGTIERSHRTFNEYI 210 Score = 62.9 bits (146), Expect = 4e-10 Identities = 31/81 (38%), Positives = 45/81 (55%) Frame = +2 Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRVS 184 G R L++IK YYWK + ++ YI+ C CQ +K + P+ T T T+ F V Sbjct: 44 GITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTH-TKTPLTYTETPTNAFDIVI 102 Query: 185 LDIVGPLPESGTAKLXYVMTL 247 +D VGPLP+S Y++TL Sbjct: 103 VDTVGPLPKSEYGN-EYIVTL 122 Score = 32.7 bits (71), Expect = 0.52 Identities = 12/40 (30%), Positives = 23/40 (57%) Frame = +3 Query: 507 KSFVNDNQDDWPRYVYTAMLSYNTAIHSTTNFSPYELLFG 626 +S+++ ++ DW ++ +NT N+ PYEL+FG Sbjct: 211 RSYISADKTDWDVWIQYFTYCFNTTPSVMHNYCPYELVFG 250 >AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein protein. Length = 826 Score = 70.5 bits (165), Expect = 2e-12 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Frame = +1 Query: 256 LTKYSAAYPLRSVSAEETTDCLI-HFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432 LTKY P+ + SA + +FI +G T +D GT + +++ + C ++KI+N Sbjct: 582 LTKYLVTIPVANKSANTVAKAIFENFILKYGPMKTFISDMGTEYKNNVIQDMCKYMKIEN 641 Query: 433 LWSTPYHPQSQGALERSHSTLKEYL 507 L ST YH Q+ G +ERSH T EY+ Sbjct: 642 LTSTAYHHQTLGTIERSHRTFNEYI 666 Score = 62.9 bits (146), Expect = 4e-10 Identities = 31/81 (38%), Positives = 45/81 (55%) Frame = +2 Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRVS 184 G R L++IK YYWK + ++ YI+ C CQ +K + P+ T T T+ F V Sbjct: 500 GITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTH-TKTPLTYTETPTNAFDIVI 558 Query: 185 LDIVGPLPESGTAKLXYVMTL 247 +D VGPLP+S Y++TL Sbjct: 559 VDTVGPLPKSEYGN-EYIVTL 578 Score = 32.7 bits (71), Expect = 0.52 Identities = 12/40 (30%), Positives = 23/40 (57%) Frame = +3 Query: 507 KSFVNDNQDDWPRYVYTAMLSYNTAIHSTTNFSPYELLFG 626 +S+++ ++ DW ++ +NT N+ PYEL+FG Sbjct: 667 RSYISADKTDWDVWIQYFTYCFNTTPSVMHNYCPYELVFG 706 >AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed DNA polymerase protein. Length = 826 Score = 70.5 bits (165), Expect = 2e-12 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Frame = +1 Query: 256 LTKYSAAYPLRSVSAEETTDCLI-HFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432 LTKY P+ + SA + +FI +G T +D GT + +++ + C ++KI+N Sbjct: 582 LTKYLVTIPVANKSANTVAKAIFENFILKYGPMKTFISDMGTEYKNNVIQDMCKYMKIEN 641 Query: 433 LWSTPYHPQSQGALERSHSTLKEYL 507 L ST YH Q+ G +ERSH T EY+ Sbjct: 642 LTSTAYHHQTLGTIERSHRTFNEYI 666 Score = 62.9 bits (146), Expect = 4e-10 Identities = 31/81 (38%), Positives = 45/81 (55%) Frame = +2 Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRVS 184 G R L++IK YYWK + ++ YI+ C CQ +K + P+ T T T+ F V Sbjct: 500 GITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTH-TKTPLTYTETPTNAFDIVI 558 Query: 185 LDIVGPLPESGTAKLXYVMTL 247 +D VGPLP+S Y++TL Sbjct: 559 VDTVGPLPKSEYGN-EYIVTL 578 Score = 32.7 bits (71), Expect = 0.52 Identities = 12/40 (30%), Positives = 23/40 (57%) Frame = +3 Query: 507 KSFVNDNQDDWPRYVYTAMLSYNTAIHSTTNFSPYELLFG 626 +S+++ ++ DW ++ +NT N+ PYEL+FG Sbjct: 667 RSYISADKTDWDVWIQYFTYCFNTTPSVMHNYCPYELVFG 706 >AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. Length = 994 Score = 65.3 bits (152), Expect = 8e-11 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Frame = +1 Query: 256 LTKYSAAYPLRSVSAEETTDCLIH-FISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432 LTK+ P + SA+ + F+ +G T TDQGT + + L C ++ I+N Sbjct: 751 LTKFLVTIPTPNKSAKTVAKAIFELFVLKYGPMKTFITDQGTEYKNSLMNELCKYMHIEN 810 Query: 433 LWSTPYHPQSQGALERSHSTLKEYL 507 L S+ +H Q+ G +ERSH T EY+ Sbjct: 811 LTSSAHHHQTLGTIERSHRTFNEYI 835 Score = 55.2 bits (127), Expect = 9e-08 Identities = 24/70 (34%), Positives = 38/70 (54%) Frame = +2 Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRVS 184 G +R S+IK YYW + + Y+K C CQ+ K + + P+ + T + F V Sbjct: 669 GISRTQSKIKRFYYWPQMTKTISKYVKTCLKCQQAK-ITTHTKTPLTLMPTPATAFDTVL 727 Query: 185 LDIVGPLPES 214 +D +GPLP+S Sbjct: 728 IDTIGPLPKS 737 Score = 33.1 bits (72), Expect = 0.40 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Frame = +3 Query: 507 KSFVNDNQDDWPRYVYTAMLSYNTAIHSTTNFSPYELLFGH--KAFIPDS-IYKQD-LTT 674 +S+++ N+ DW ++ +NT ++ PYEL+FG + F S I K D + Sbjct: 836 RSYISVNKSDWDIWLPYFTYCFNTTPSIVHDYCPYELVFGRLPRQFKDFSKINKIDPIYN 895 Query: 675 YPDYVRMLQHRLKQSW 722 DY + L+ RL+ S+ Sbjct: 896 LDDYSKELKCRLELSY 911 >AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse transcriptase protein. Length = 1088 Score = 63.3 bits (147), Expect = 3e-10 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432 + +K++AAYP+ + + L HFIS FGIP + DQG F SD+F C+ I + Sbjct: 837 KFSKFAAAYPITNRNCINVVKALKHFISQFGIPKKLIYDQGAEFASDMFNKFCTQFNI-D 895 Query: 433 LWSTPYHPQSQGA-LERSHSTLKE 501 L T + S + +ER HSTL E Sbjct: 896 LHVTSFQQSSSNSPVERLHSTLTE 919 Score = 30.3 bits (65), Expect = 2.8 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +3 Query: 561 MLSYNTAIHSTTNFSPYELLFG 626 +++YN AIHS T +P+EL G Sbjct: 945 LITYNNAIHSATKHTPFELFNG 966 >AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse transcriptase protein. Length = 1217 Score = 52.0 bits (119), Expect = 8e-07 Identities = 25/83 (30%), Positives = 43/83 (51%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432 + +K++A YP+ + + + +F S FG+P + DQG F +D+F+ CS I Sbjct: 948 KFSKFAAVYPIPNRNGINCIKAIKNFFSQFGLPKKLIHDQGVEFCNDIFRKFCSQYNILL 1007 Query: 433 LWSTPYHPQSQGALERSHSTLKE 501 ++ S +ER HS+L E Sbjct: 1008 HVTSFQQSSSNSPVERLHSSLTE 1030 Score = 34.3 bits (75), Expect = 0.17 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +3 Query: 561 MLSYNTAIHSTTNFSPYELLFGHKAFIPDSIYKQDLTTYPDYVRMLQHRL 710 +++YN AIHSTT +P+EL G +I + Y + + Q +L Sbjct: 1056 VITYNNAIHSTTKHTPFELFNGRTHLFEKTIIPNNEHDYLNKLNTFQDKL 1105 Score = 30.7 bits (66), Expect = 2.1 Identities = 13/55 (23%), Positives = 26/55 (47%) Frame = +2 Query: 29 IKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRVSLDI 193 +K + Y+ +K+ + I+NC C + K R+ + T + P + +DI Sbjct: 880 LKRETYFPNMKNKISELIRNCETCLKLKYDRQPQNIVFETPETPSKPLDIIHIDI 934 >AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p protein. Length = 451 Score = 46.8 bits (106), Expect = 3e-05 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +2 Query: 38 KYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRVSLDIVGPLPES 214 +YYW G+ V Y++NC C K + A +T P+ V D VGPLP S Sbjct: 119 RYYWPGMHRGVRKYVRNCECCMMYKP-SQLQAAGKMLTQVPEEPWATVCADFVGPLPRS 176 Score = 39.5 bits (88), Expect = 0.005 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIH-FISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIK 429 R +K++ P+R + E + ++ +G+P + TD T F+ L ++ Sbjct: 189 RFSKWTEIVPMRRATTETMRKAVRERIVARYGVPKVMITDNNVQLTIRAFRKFLEELGVR 248 Query: 430 NLWSTPYHPQSQGALERSHSTLK 498 + + PY PQ + ER++ T+K Sbjct: 249 HQLTAPYTPQ-ENPTERANRTVK 270 Score = 31.5 bits (68), Expect = 1.2 Identities = 13/53 (24%), Positives = 27/53 (50%) Frame = +3 Query: 513 FVNDNQDDWPRYVYTAMLSYNTAIHSTTNFSPYELLFGHKAFIPDSIYKQDLT 671 F +Q W + L+ NT++ TT +SP + G + +P++++ + T Sbjct: 276 FTGADQRTWDEHWPELQLAVNTSVAETTGYSPAFITQGREPRLPNALFDEKTT 328 >Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia polyprotein protein. Length = 1333 Score = 45.2 bits (102), Expect = 9e-05 Identities = 23/86 (26%), Positives = 44/86 (51%) Frame = +1 Query: 259 TKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKNLW 438 +K+ +P +S EE L + ++FG P I +D+GT FTS F+ S ++++ Sbjct: 1067 SKFVWLFPTKSTGQEEVVKRLTDWSNIFGFPKRIVSDKGTAFTSGAFEQFMSSHNVEHVC 1126 Query: 439 STPYHPQSQGALERSHSTLKEYLNHL 516 +T + G +ER + + ++ L Sbjct: 1127 TTTGVARGNGQIERVNRLILAIISKL 1152 Score = 35.1 bits (77), Expect = 0.098 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = +3 Query: 519 NDNQDDWPRYVYTAMLSYNTAIHSTTNFSPYELLFGHKAF 638 +D W +YV + N +HS+ SP+E++FG K + Sbjct: 1154 SDEPSKWYKYVPEVQKAINCHVHSSLKLSPFEVMFGTKMY 1193 >AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p protein. Length = 1026 Score = 44.8 bits (101), Expect = 1e-04 Identities = 22/74 (29%), Positives = 39/74 (52%) Frame = +1 Query: 259 TKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKNLW 438 +K+ +P +S EE L + ++FG P I +D+GT FTS F+ S ++++ Sbjct: 760 SKFVWLFPTKSTGQEEVVKRLTDWSNIFGFPKRIVSDKGTAFTSGAFEQFMSSHNVEHVC 819 Query: 439 STPYHPQSQGALER 480 +T + G +ER Sbjct: 820 TTTGVARGNGQIER 833 Score = 35.1 bits (77), Expect = 0.098 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = +3 Query: 519 NDNQDDWPRYVYTAMLSYNTAIHSTTNFSPYELLFGHKAF 638 +D W +YV + N +HS+ SP+E++FG K + Sbjct: 847 SDEPSKWYKYVPEVQKAINCHVHSSLKLSPFEVMFGTKMY 886 >AE014135-102|AAF59331.1| 131|Drosophila melanogaster CG11260-PA protein. Length = 131 Score = 42.3 bits (95), Expect = 6e-04 Identities = 23/59 (38%), Positives = 31/59 (52%) Frame = +1 Query: 259 TKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKNL 435 +KY YP RS EE +C+ FG P I +D+G FTS LFK +I++L Sbjct: 24 SKYVWFYPTRSTGVEEVLNCIERQALNFGKPFRIVSDRGAAFTSHLFKEYYEKHQIRHL 82 >X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. melanogaster retrotransposongypsy gene fragment for reverse transcriptase-like enzyme.). Length = 930 Score = 41.5 bits (93), Expect = 0.001 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTC-SFLKIK 429 + +KY+ P+ S + + T L+ I+LF T++ D F S+ S + I Sbjct: 808 KFSKYAIVQPVVSRTIVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSMLKNTFGID 867 Query: 430 NLWSTPYHPQSQGALERSHSTLKE 501 + + P H S G +ER HSTL E Sbjct: 868 IVNAPPLHSSSNGQVERFHSTLAE 891 >M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein protein. Length = 1010 Score = 41.5 bits (93), Expect = 0.001 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTC-SFLKIK 429 + +KY+ P+ S + + T L+ I+LF T++ D F S+ S + I Sbjct: 803 KFSKYAIVQPVVSRTIVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGID 862 Query: 430 NLWSTPYHPQSQGALERSHSTLKE 501 + + P H S G +ER HSTL E Sbjct: 863 IVNAPPLHSSSNGQVERFHSTLAE 886 >EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein protein. Length = 1045 Score = 41.5 bits (93), Expect = 0.001 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTC-SFLKIK 429 + +KY+ P+ S + + T L+ I+LF T++ D F S+ S + I Sbjct: 838 KFSKYAIVQPVVSRTIVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGID 897 Query: 430 NLWSTPYHPQSQGALERSHSTLKE 501 + + P H S G +ER HSTL E Sbjct: 898 IVNAPPLHSSSNGQVERFHSTLAE 921 >EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein protein. Length = 1045 Score = 41.5 bits (93), Expect = 0.001 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTC-SFLKIK 429 + +KY+ P+ S + + T L+ I+LF T++ D F S+ S + I Sbjct: 838 KFSKYAIVQPVVSRTIVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGID 897 Query: 430 NLWSTPYHPQSQGALERSHSTLKE 501 + + P H S G +ER HSTL E Sbjct: 898 IVNAPPLHSSSNGQVERFHSTLAE 921 >DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein protein. Length = 1010 Score = 41.5 bits (93), Expect = 0.001 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTC-SFLKIK 429 + +KY+ P+ S + + T L+ I+LF T++ D F S+ S + I Sbjct: 803 KFSKYAIVQPVVSRTIVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGID 862 Query: 430 NLWSTPYHPQSQGALERSHSTLKE 501 + + P H S G +ER HSTL E Sbjct: 863 IVNAPPLHSSSNGQVERFHSTLAE 886 >DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein protein. Length = 1010 Score = 41.5 bits (93), Expect = 0.001 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTC-SFLKIK 429 + +KY+ P+ S + + T L+ I+LF T++ D F S+ S + I Sbjct: 803 KFSKYAIVQPVVSRTIVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGID 862 Query: 430 NLWSTPYHPQSQGALERSHSTLKE 501 + + P H S G +ER HSTL E Sbjct: 863 IVNAPPLHSSSNGQVERFHSTLAE 886 >AJ279888-1|CAB69645.1| 120|Drosophila melanogaster integrase protein. Length = 120 Score = 41.5 bits (93), Expect = 0.001 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTC-SFLKIK 429 + +KY+ P+ S + + T L+ I+LF T++ D F S+ S + I Sbjct: 35 KFSKYAIVQPVVSRTIVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGID 94 Query: 430 NLWSTPYHPQSQGALERSHSTLKE 501 + + P H S G +ER HSTL E Sbjct: 95 IVNAPPLHSSSNGQVERFHSTLAE 118 >AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol protein. Length = 1463 Score = 41.5 bits (93), Expect = 0.001 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTC-SFLKIK 429 + +KY+ P+ S + + T L+ I+LF T++ D F S+ S + I Sbjct: 1256 KFSKYAIVQPVVSRTIVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGID 1315 Query: 430 NLWSTPYHPQSQGALERSHSTLKE 501 + + P H S G +ER HSTL E Sbjct: 1316 IVNAPPLHSSSNGQVERFHSTLAE 1339 >X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. Length = 1494 Score = 40.7 bits (91), Expect = 0.002 Identities = 22/86 (25%), Positives = 40/86 (46%) Frame = +1 Query: 259 TKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKNLW 438 TK+ Y ++ + +E L + + P I +D+G FTS F S +K++ Sbjct: 1296 TKFVRLYATKTTNTKEVIQSLNDYFRAYSRPKCIISDRGACFTSGDFDSFLKECNVKHIK 1355 Query: 439 STPYHPQSQGALERSHSTLKEYLNHL 516 PQ+ G +ER + +L ++ L Sbjct: 1356 IATGSPQANGQVERINRSLGPMISKL 1381 >AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein protein. Length = 1037 Score = 40.3 bits (90), Expect = 0.003 Identities = 21/66 (31%), Positives = 33/66 (50%) Frame = +2 Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRVS 184 G N + I+EKYY+ ++ ++NYI NC +C K R+ + IT T + Sbjct: 745 GINEIFISIREKYYYPKMQKFIQNYINNCKICNLAKYDRQPIKYNFNITETPDKINDIIH 804 Query: 185 LDIVGP 202 +DI P Sbjct: 805 IDIWYP 810 Score = 33.9 bits (74), Expect = 0.23 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +3 Query: 522 DNQDDWPRYVYTAMLSYNTAIHSTTNFSPYEL 617 +N D VY A++ YN IHSTTN P +L Sbjct: 912 NNFDTIQENVYKAIVCYNNTIHSTTNIRPIDL 943 >AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein. Length = 2360 Score = 39.9 bits (89), Expect = 0.003 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Frame = +2 Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLC---QENKALRRCNRAPMQITTTSTSPFQ 175 G N M + I+ KY+ G+K+ ++ Y++ C C ++N A + P + T T PF Sbjct: 1399 GINLMRNYIQRKYWIFGLKNSLKKYLRECVTCARYKQNTAQQIMGNLP-KYRVTMTFPFL 1457 Query: 176 RVSLDIVGP 202 +D GP Sbjct: 1458 NTGIDYAGP 1466 >U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transcriptase polyprotein protein. Length = 1041 Score = 38.3 bits (85), Expect = 0.011 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTC-SFLKIK 429 + +K++ P+ S + + ++ ++ F TIF D + S+ KS + + Sbjct: 834 KFSKFAIVQPIGSRTITDLEPAIMQLMNFFPHSKTIFCDNEPSINSESIKSLLKNRFNVD 893 Query: 430 NLWSTPYHPQSQGALERSHSTLKE 501 + P H S G +ER HSTL E Sbjct: 894 IANAPPLHSTSNGQVERFHSTLLE 917 >X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein protein. Length = 1053 Score = 37.1 bits (82), Expect = 0.024 Identities = 20/85 (23%), Positives = 39/85 (45%) Frame = +2 Query: 2 LGGNRMLSRIKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRV 181 LG + L ++ + Y++ + V ++ NC C+ K+ +A + ++ P+ + Sbjct: 961 LGWQKTLDKVYQYYWFAKMNKYVRKFVSNCITCRSVKSSSGKVQAELHSIPKTSIPWHTI 1020 Query: 182 SLDIVGPLPESGTAKLXYVMTLQDA 256 +DI G L K YV+ DA Sbjct: 1021 HIDITGKLSGKSDLK-EYVIVQIDA 1044 >AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed DNA polymerase protein. Length = 1065 Score = 35.9 bits (79), Expect = 0.056 Identities = 15/62 (24%), Positives = 31/62 (50%) Frame = +2 Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQRVS 184 G + + KEKYY+ + ++N I C +C +K R + ++T + +P ++ Sbjct: 765 GIEKQTNLFKEKYYYPDYQKLIQNIINECEVCNISKTEHRDTKLRYELTPETFNPREKYV 824 Query: 185 LD 190 +D Sbjct: 825 ID 826 >AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse transcriptase-like polymeraseprotein. Length = 1059 Score = 35.5 bits (78), Expect = 0.074 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTCSF-LKIK 429 + +K + ++S + E+ L + +G+P I D + S K + L I+ Sbjct: 841 KFSKLAMGRVIKSKAVEDIRKALRDIVFYYGVPKLIVMDNEKSLNSASIKFMLTDQLGIE 900 Query: 430 NLWSTPYHPQSQGALERSHSTLKEYLNHL 516 + PY G +ER HSTL E + L Sbjct: 901 LYKAPPYKSTVNGQIERFHSTLSEIMRCL 929 Score = 31.1 bits (67), Expect = 1.6 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +3 Query: 558 AMLSYNTAIHSTTNFSPYELLFGHKAFIPDSIYKQDLTTYPDYVRMLQ 701 A+ YN +HS T P E+ FG A + Y+Q D +R Q Sbjct: 945 AIYEYNYTVHSVTKKRPLEVFFGRIATVAPEKYEQARLDNIDRLRQKQ 992 >AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed DNA polymerase protein. Length = 1013 Score = 33.9 bits (74), Expect = 0.23 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTC-SFLKIK 429 + +K++ P+ S + E+ L+ +++F TI+ D + S + + + Sbjct: 806 KFSKFAMVQPILSRTIEDLKAPLLQLMNVFPKAKTIYCDNEPSLKSQTIVAMLENHFGVS 865 Query: 430 NLWSTPYHPQSQGALERSHSTLKE 501 + P H S G +ER HSTL E Sbjct: 866 ISNAPPLHSVSNGQVERFHSTLIE 889 >AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein protein. Length = 849 Score = 30.7 bits (66), Expect = 2.1 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = +2 Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQIT 151 G + + E YY+ + ++N I C +C K R PM+IT Sbjct: 728 GIQKTVKLFSENYYFPNSQLLIQNIINECQVCNLAKTEHRNTEMPMKIT 776 >X15707-1|CAA33737.1| 267|Drosophila melanogaster protein ( Drosophila melanogasterDNA sequence (isolate CBS) for 18S rRNA (3'end), 5.8SrRNA and 28S rRNA (5'end). ). Length = 267 Score = 29.9 bits (64), Expect = 3.7 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Frame = +1 Query: 253 RLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTC-SFLKIK 429 + +K++ + S + E+ ++ ++ F ++ D + S + + + Sbjct: 84 KFSKFAIEQHVHSRTIEDLKPAILQIMNFFPRARVVYCDNEPSLNSHTISTMLDNHFGVS 143 Query: 430 NLWSTPYHPQSQGALERSHSTLKE 501 + P H S G +ER HSTL E Sbjct: 144 IANAPPLHSVSNGQVERFHSTLLE 167 >X07656-2|CAA30503.1| 982|Drosophila melanogaster protein ( Drosophila melanogasterretrotransposon 1731 sequence. ). Length = 982 Score = 29.1 bits (62), Expect = 6.4 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +1 Query: 358 IFTDQGTNFTSDLFKSTCSFLKIKNLWSTPYHPQSQGALERSHSTLKE 501 I +D G F +++F I + P+ PQ G ER++ TL E Sbjct: 265 IRSDNGGEFVNNVFDDYLKAHGIARQLTIPHTPQQNGVAERANRTLVE 312 >AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. Length = 1003 Score = 28.7 bits (61), Expect = 8.5 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 549 VYTAMLSYNTAIHSTTNFSPYELLF 623 V+ A+ YNT++HS TN P ++ F Sbjct: 883 VHIAVDRYNTSVHSVTNRKPADVFF 907 >AY058502-1|AAL13731.1| 280|Drosophila melanogaster LD21171p protein. Length = 280 Score = 28.7 bits (61), Expect = 8.5 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 549 VYTAMLSYNTAIHSTTNFSPYELLF 623 V+ A+ YNT++HS TN P ++ F Sbjct: 160 VHIAVDRYNTSVHSVTNRKPADVFF 184 >AJ010298-1|CAA09069.1| 1571|Drosophila melanogaster polyprotein protein. Length = 1571 Score = 28.7 bits (61), Expect = 8.5 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +2 Query: 5 GGNRMLSR-IKEKYYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPFQR 178 GGN+++ R I+ KY+ IK+ ++ + +C +C +K RR M + + F R Sbjct: 1358 GGNQLMVRLIRSKYWIPRIKNLMKAVVNSCKVCVIHK--RRLQSQLMGVLPKERASFSR 1414 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 32,584,389 Number of Sequences: 53049 Number of extensions: 707110 Number of successful extensions: 1932 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 1793 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1922 length of database: 24,988,368 effective HSP length: 83 effective length of database: 20,585,301 effective search space used: 3252477558 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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